Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0812
(692 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17) 31 1.2
SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07) 30 1.5
SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29) 30 2.0
SB_27931| Best HMM Match : Filament (HMM E-Value=0.028) 30 2.0
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 30 2.0
SB_51234| Best HMM Match : E-MAP-115 (HMM E-Value=6.7) 29 3.6
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029) 29 4.7
SB_43512| Best HMM Match : RNA_pol_delta (HMM E-Value=4.7) 29 4.7
SB_41631| Best HMM Match : Ank (HMM E-Value=0.00018) 29 4.7
SB_52342| Best HMM Match : ABC_tran (HMM E-Value=5.29999e-41) 28 6.2
SB_11678| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_32607| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 28 6.2
SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0) 28 8.3
SB_42034| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_27468| Best HMM Match : Peptidase_C48 (HMM E-Value=0.0026) 28 8.3
SB_17091| Best HMM Match : DUF931 (HMM E-Value=8.3) 28 8.3
SB_11829| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
Length = 761
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -2
Query: 226 FILWAFLVWFQTIAFITFSLIFFMIATV-VINKLNLISFFIFCFTLDNFSIMTLTKFGRF 50
F+++ + F AF+ F IFF + V N + F F F F F F
Sbjct: 687 FVVYPYFFLFVVFAFVVFIFIFFFAFVIFVFNAFFVFVVFAF-FVFLVFVFFVSVVFVFF 745
Query: 49 VFIAFCVF 26
VF+ + F
Sbjct: 746 VFVVYVFF 753
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 268 FVGHLFMIV*TFIIFILWAFLVWFQTIAFITFSLIFFMIATVVI 137
FV +F+ F+IF+ AF V F AF F + F ++ V +
Sbjct: 701 FVVFIFIFFFAFVIFVFNAFFV-FVVFAFFVFLVFVFFVSVVFV 743
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = -2
Query: 268 FVGHLFMIV*TFIIFILWAFLVWFQTIAFITFSLIFFMIATVV 140
F + + F +F+++AF V+ + F++ +FF+ V
Sbjct: 709 FFAFVIFVFNAFFVFVVFAFFVFLVFVFFVSVVFVFFVFVVYV 751
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/81 (24%), Positives = 31/81 (38%)
Frame = -2
Query: 346 FPFLKLSVFRPLRSISIVM*RESLSHFVGHLFMIV*TFIIFILWAFLVWFQTIAFITFSL 167
F F FR LR S+V +F + FI +AF+++ F+
Sbjct: 667 FSFFFAFAFRRLRLDSVVFAFVVYPYFFLFVVFAFVVFIFIFFFAFVIFVFNAFFVFVVF 726
Query: 166 IFFMIATVVINKLNLISFFIF 104
FF+ V + FF+F
Sbjct: 727 AFFVFLVFVFFVSVVFVFFVF 747
>SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)
Length = 2435
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/108 (19%), Positives = 50/108 (46%)
Frame = -2
Query: 463 ILIFYHLLI*SLIHNVVEHLVAFVILEFVAIVVIAFFLSFPFLKLSVFRPLRSISIVM*R 284
+L+ L+ +I ++ L+ ++L + +++I F+ L + + L +I+I +
Sbjct: 1574 LLLIILLITLLIIILIIILLIIILLLLILLLIIIIIFIIIIILIIIIILILLTITITITI 1633
Query: 283 ESLSHFVGHLFMIV*TFIIFILWAFLVWFQTIAFITFSLIFFMIATVV 140
+ + + +I+ I+FI+ +T F+TF MI +
Sbjct: 1634 TIIIIIIIIIIIIIIIIIVFIVVIINFQLKTAKFLTFVFAVIMILVTI 1681
>SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)
Length = 462
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/57 (24%), Positives = 31/57 (54%)
Frame = +2
Query: 92 EGKTKDEKRNQVKLIDDYGSDHKENETKSNKSDRLKPYKKSPKDENDKCSDNHKQMA 262
EGK ++ ++ Q + + G + K + K+ R + +K+P++ +K NH++ A
Sbjct: 143 EGKNRNTRKRQEQKTPEEGKNRKHQKKARTKTTRSRQEQKTPEEGKNK---NHQKRA 196
>SB_27931| Best HMM Match : Filament (HMM E-Value=0.028)
Length = 428
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +2
Query: 104 KDEKRNQVKLIDDYGSDHKENETKSNKSDRLKP---YKKSP-KDENDKCSDNHKQMAYKM 271
+DE + V ++DYG + +E K++K +++P +K P + D N+ QM ++
Sbjct: 31 EDETKKLVTQLEDYGFSKEIHERKNDKGGKIEPISSFKLGPGSTQMDVLQKNYDQMVSRV 90
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +2
Query: 107 DEKRNQVKLIDDYGSDHKENETKSNKSDRLKPYKKSPKDENDK 235
D++R Q++ I G+ K N+T + R++ K++ KD+++K
Sbjct: 893 DKRRTQMR-IPRKGTPRKRNQTNPREQRRVRKVKETTKDDDNK 934
>SB_51234| Best HMM Match : E-MAP-115 (HMM E-Value=6.7)
Length = 122
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +1
Query: 295 QLRSSEEDEKQKALRREMKEKKR 363
Q++ ++E +KQKA R+ KEKKR
Sbjct: 91 QIKDAKEKQKQKAEERKEKEKKR 113
>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
Length = 1866
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 295 QLRSSEEDEKQKALRREMKEKKR 363
+LR EE EKQK R KEK+R
Sbjct: 957 RLREKEEKEKQKEAERAKKEKER 979
>SB_43512| Best HMM Match : RNA_pol_delta (HMM E-Value=4.7)
Length = 241
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 83 KIIEGKTKDEKRNQVKLIDDYGSDHKENETKSNKSDRLKPYKKSPKDENDK 235
K ++ K +DEK++ K +D+ D K+N++ ++ DE D+
Sbjct: 165 KKVDEKKEDEKKDDDKKVDEKKEDDKKNDSSASGESEDSDDGDDEDDEEDE 215
>SB_41631| Best HMM Match : Ank (HMM E-Value=0.00018)
Length = 353
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 98 KTKDEKRNQVKLIDDYGSDHKENETKSNKSDRLKPYKKSPKDENDK 235
K +DE+R + + SDH++ E+ + R K Y+K + ND+
Sbjct: 158 KQRDERRKSREYDSHHHSDHRDEESHRDGRKRSKDYEK--QHHNDR 201
>SB_52342| Best HMM Match : ABC_tran (HMM E-Value=5.29999e-41)
Length = 336
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -2
Query: 232 IIFILWAFLVWFQTIAFITFSLIFFMIATVVINK 131
I++ + AF WF I F+T +L ++I T+V+ +
Sbjct: 68 IVYFIAAFNGWFGLIVFLTMAL--YLIVTIVLTE 99
>SB_11678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 137 DDYGSDHKENETKSNKSDRLKPYKKSPKDENDKCSDNH 250
DDYGSD+ N+ ++ D DEND DN+
Sbjct: 24 DDYGSDNNGND-NNDDDDGSNENDDDGSDENDYVGDNN 60
>SB_32607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 137 DDYGSDHKENETKSNKSDRLKPYKKSPKDENDKCSDNH 250
DDYGSD+ N+ ++ D DEND DN+
Sbjct: 24 DDYGSDNNGND-NNDDDDGSNENDDDGSDENDYVGDNN 60
>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
Length = 2565
Score = 28.3 bits (60), Expect = 6.2
Identities = 25/132 (18%), Positives = 59/132 (44%)
Frame = -2
Query: 397 FVILEFVAIVVIAFFLSFPFLKLSVFRPLRSISIVM*RESLSHFVGHLFMIV*TFIIFIL 218
F+++ I++I + + + V R I+I++ V ++ +I+ +I ++
Sbjct: 2112 FIVITVTIIIIIVIVIIIIIIIVIVIRITIIIAIII--------VANIVIIISIIVIIVI 2163
Query: 217 WAFLVWFQTIAFITFSLIFFMIATVVINKLNLISFFIFCFTLDNFSIMTLTKFGRFVFIA 38
F+V I +I +I T+++ +N+I F + + I+ + F+ +
Sbjct: 2164 --FIVIIIVIVLTITIIIAIIIVTIIVITINII-FIVIVIIISIIGIIIVIII--FIIVI 2218
Query: 37 FCVF*ISSFGMF 2
F + +SS F
Sbjct: 2219 FIITIVSSTPTF 2230
>SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 1589
Score = 27.9 bits (59), Expect = 8.3
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Frame = -2
Query: 364 IAFFLSFPFLKLSVFRPLRSI---SIVM*RESLSHF---VGHLFMIV*TFIIFILWAFLV 203
+AFF+S FL+L F S+ ++ + L+HF G +FM F I L
Sbjct: 1356 VAFFVSLKFLRLFRFNKRMSLLATTLKCSAKELAHFSIVFGLVFMAFVHFCYLIFSTELY 1415
Query: 202 WFQTIAFITFSLIFFMIATVVINKL----NLISFFIFCF 98
F T+ +LI M+ +L L++ F+F F
Sbjct: 1416 IFHTVLSTVETLISVMLGKFSYERLLQTNRLLAPFMFFF 1454
>SB_42034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 504
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +2
Query: 92 EGKTKDEKRNQVKLIDDYGSDHKENETKSNKSDR--LKPYKKSPKDENDKCSDN 247
E + K+ + +GS+ E + +SD L KK PKDEN+ +N
Sbjct: 235 EEEEKESESESETASSAFGSEESEVSSSEEESDEGDLFGEKKKPKDENEDEEEN 288
>SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1090
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +2
Query: 92 EGKTKDEKRNQVKLIDDYGSDHKENETKSNKSDR--LKPYKKSPKDENDKCSDN 247
E + K+ + +GS+ E + +SD L KK PKDEN+ +N
Sbjct: 99 EEEEKESESESETASSAFGSEESEVSSSEEESDEGDLFGEKKKPKDENEDEEEN 152
>SB_27468| Best HMM Match : Peptidase_C48 (HMM E-Value=0.0026)
Length = 766
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +2
Query: 98 KTKDEKRNQVKLIDDYGSDHKENETKSNKSDRLKPYKKSPKDENDKCSDNHKQMA 262
KTK ++ ++ + SD ++N+ ++D+ K K P+D+ D S+N + A
Sbjct: 387 KTKSQEPDKPVCVLISSSDEEDNQ----EADKYKVSKDEPQDKEDDDSENSSEQA 437
>SB_17091| Best HMM Match : DUF931 (HMM E-Value=8.3)
Length = 193
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/108 (18%), Positives = 53/108 (49%)
Frame = -2
Query: 460 LIFYHLLI*SLIHNVVEHLVAFVILEFVAIVVIAFFLSFPFLKLSVFRPLRSISIVM*RE 281
L+F+ ++ ++ VV ++ FV++ FV +VV F + + ++V + + +V+
Sbjct: 4 LVFFVNVVGGVVVEVVVGVLVFVVVFFVVVVVGVFVVVVVGVLVAVVIVV-FVDVVVDVF 62
Query: 280 SLSHFVGHLFMIV*TFIIFILWAFLVWFQTIAFITFSLIFFMIATVVI 137
+ V L ++V ++ ++ +V+ + + L+ + VV+
Sbjct: 63 VVGVVVVGLIVVVIVIVLVVVLVGIVFVGVLVLVVGVLVVVFVCVVVV 110
>SB_11829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 495
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 143 YGSDHKENETKSNKSDRLKPYKKSPKDENDKCSDNHK 253
Y + H ++TKS SD + P K E D C + K
Sbjct: 392 YNTRHVNSKTKSYDSDFVNPTDSEWKQEKDVCGEVSK 428
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,949,541
Number of Sequences: 59808
Number of extensions: 313461
Number of successful extensions: 1658
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1648
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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