Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0812
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   2.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   3.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.6  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 146 GSDHKENETKSNKSDRLKPYKKSPKDEN 229
           G + K N TKS  +D +   KK P D N
Sbjct: 8   GGNWKMNGTKSEINDIVGFLKKGPLDSN 35


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 146 GSDHKENETKSNKSDRLKPYKKSPKD 223
           GSD KEN      +D +  Y  +P+D
Sbjct: 310 GSD-KENHKTEEPNDEVATYDNTPRD 334


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 159 KKMRLKVIKAIV*NHTRKAQRMKMINVQTIIN 254
           KK  LKVI  +V NHT    +   +++    N
Sbjct: 108 KKQNLKVILDLVPNHTSDQHKWFQMSINNTNN 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,341
Number of Sequences: 438
Number of extensions: 3096
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)