Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0812
(692 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g28770.1 68416.m03591 expressed protein 34 0.078
At3g58050.1 68416.m06471 expressed protein 32 0.41
At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ... 31 0.96
At3g11720.1 68416.m01437 expressed protein 30 1.7
At5g62750.1 68418.m07877 expressed protein predicted proteins, C... 29 2.2
At5g06650.1 68418.m00751 zinc finger (C2H2 type) family protein ... 29 2.2
At3g15530.2 68416.m01969 expressed protein 29 2.9
At3g15530.1 68416.m01968 expressed protein 29 2.9
At1g56660.1 68414.m06516 expressed protein 29 2.9
At5g48610.1 68418.m06012 expressed protein ; expression supporte... 29 3.9
At4g21480.1 68417.m03106 glucose transporter, putative similar t... 29 3.9
At3g61415.1 68416.m06878 SKP1 family protein low similarity to S... 29 3.9
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 29 3.9
At1g66640.1 68414.m07572 expressed protein 29 3.9
At1g79890.1 68414.m09334 helicase-related similar to CHL1 potent... 28 5.1
At1g10680.1 68414.m01214 P-glycoprotein, putative similar to P-g... 28 5.1
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 28 6.8
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 28 6.8
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 28 6.8
At3g43930.1 68416.m04702 expressed protein predicted proteins, A... 28 6.8
At2g26470.1 68415.m03176 expressed protein contains PF02586: Unc... 28 6.8
At2g20570.1 68415.m02402 golden2-like transcription factor (GLK1... 28 6.8
At5g55660.1 68418.m06940 expressed protein similar to unknown pr... 27 8.9
At2g47620.1 68415.m05941 SWIRM domain-containing protein / DNA-b... 27 8.9
At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]... 27 8.9
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 34.3 bits (75), Expect = 0.078
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = +2
Query: 80 AKIIEGKTKDEKRNQVKLIDDYGSDHKENETKSNKSDRLKPYKKSPKDENDKCSDNHK 253
+K E K++K++Q K ++ S+ ++++ + +S LK KK + + K S+NHK
Sbjct: 1020 SKTKEEAKKEKKKSQDKKREEKDSEERKSKKEKEESRDLKAKKKEEETKEKKESENHK 1077
Score = 28.3 bits (60), Expect = 5.1
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +2
Query: 68 KGHYAKII--EGKTKDEKRNQVKLIDDYGSDHKENET-KSNKSDRLKPYKKSPKDENDKC 238
K + K++ E K++K N+ K S+ KE E+ KS K++ K KKS KD+ K
Sbjct: 1140 KSQHVKLVKKESDKKEKKENEEK------SETKEIESSKSQKNEVDKKEKKSSKDQQKKK 1193
Query: 239 SDNHKQMAYK 268
K+ K
Sbjct: 1194 EKEMKESEEK 1203
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Frame = +2
Query: 65 SKGHYAKIIEGKTKDEKRNQVKLIDDYGSDHKENETKSNKSDRLKP---------YKKSP 217
S+ H +K E K + E +K +D K E+KS K + K K
Sbjct: 1073 SENHKSKKKEDKKEHEDNKSMKKEEDKKEKKKHEESKSRKKEEDKKDMEKLEDQNSNKKK 1132
Query: 218 KDENDKCSDNHKQMAYK 268
+D+N+K H ++ K
Sbjct: 1133 EDKNEKKKSQHVKLVKK 1149
>At3g58050.1 68416.m06471 expressed protein
Length = 1209
Score = 31.9 bits (69), Expect = 0.41
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +2
Query: 83 KIIEGKTKDEKRNQVKLIDDYGSDHKENETKSNKSDRLKPYKKSPKDENDKCSD 244
K++E + K EKR + + + S KE E K K +RLK K + +N +CSD
Sbjct: 530 KLLEEEEK-EKREEEERKEKKRS--KEREKKLRKKERLKEKDKGKEKKNPECSD 580
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 295 QLRSSEEDEKQKALRREMKEKKR 363
Q++ EE+EK+K E KEKKR
Sbjct: 528 QVKLLEEEEKEKREEEERKEKKR 550
>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
protein NAP57) {Rattus norvegicus}; contains Pfam
profiles PF01509: TruB family pseudouridylate synthase
(N terminal domain), PF01472: PUA domain; supporting
cDNA gi|8901185|gb|AF234984.2|AF234984
Length = 565
Score = 30.7 bits (66), Expect = 0.96
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 83 KIIEGKTKDEKRNQVKLIDDYGSDHKENETKSNKSDRLKPYKKSPKDENDK 235
K+ K K +K + + ++ GS+ KE + K +K + + SPK E K
Sbjct: 472 KVKSSKKKKKKDKEEEKEEEAGSEKKEKKKKKDKKEEVIEEVASPKSEKKK 522
>At3g11720.1 68416.m01437 expressed protein
Length = 542
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/55 (27%), Positives = 32/55 (58%)
Frame = +2
Query: 92 EGKTKDEKRNQVKLIDDYGSDHKENETKSNKSDRLKPYKKSPKDENDKCSDNHKQ 256
+G+ +EK +++ DD KENET+ +++ + + P+ E ++C D+ K+
Sbjct: 311 QGRDCEEKEPKLEADDDM---EKENETRDCENESVPCKRDVPEIEEEECVDDLKE 362
>At5g62750.1 68418.m07877 expressed protein predicted proteins,
Caenorhabditis elegans
Length = 124
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 98 KTKDEKRNQVKLIDDYGSDHKENETKSNKSDRLKPYKKSPKDEND 232
K KD+K + G + ++ E KS K D+ +K+P+D+ D
Sbjct: 31 KDKDKKDKNEDDKNGGGEEGEDQEKKSKKKDKKAKKEKNPEDKKD 75
>At5g06650.1 68418.m00751 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 191
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 113 KRNQVKLID-DYGSDHKENETKSNKSDRLKPYKKSPKDENDKC 238
K ++L ++G+ H+E+E+K N ++ + K K++ KC
Sbjct: 15 KERPIRLFGFEFGASHEESESKDNYNENNESIKDDNKEKRFKC 57
>At3g15530.2 68416.m01969 expressed protein
Length = 288
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -2
Query: 229 IFILWAFLVWFQTIAFITFSLIFFMIATVVINKLNLISFFIFCFTLDNF 83
I+ ++ W QT+ F+ F FF + +++ LI F CF LD+F
Sbjct: 13 IYAIYGIEQW-QTLVFLLFHAFFFSLLSLLF----LIYFDQICFFLDSF 56
>At3g15530.1 68416.m01968 expressed protein
Length = 288
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -2
Query: 229 IFILWAFLVWFQTIAFITFSLIFFMIATVVINKLNLISFFIFCFTLDNF 83
I+ ++ W QT+ F+ F FF + +++ LI F CF LD+F
Sbjct: 13 IYAIYGIEQW-QTLVFLLFHAFFFSLLSLLF----LIYFDQICFFLDSF 56
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +2
Query: 92 EGKTKDEKRNQVKLIDDYGSDHKENETKSNKSDRLKPYKKSPKDE 226
EGK E + +DD +DHKE + K NK D+ K K++ DE
Sbjct: 300 EGKKTKEHDATEQEMDDEAADHKEGKKKKNK-DKAKK-KETVIDE 342
>At5g48610.1 68418.m06012 expressed protein ; expression supported
by MPSS
Length = 470
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 62 FSKGHYAKIIEGKTKDEKRNQVKLIDDYGSDH-KENETKSNKSDRLKPYKKSPKDENDKC 238
F H + GK E R+QV+ + H KEN TKS K + KK+ + D+
Sbjct: 177 FGADHKRAEVMGKPM-ENRDQVRQTESAEKSHRKENVTKSEKPRDQEGVKKTEAKDKDRN 235
Query: 239 SDNHKQ 256
+ ++
Sbjct: 236 KEKKEE 241
>At4g21480.1 68417.m03106 glucose transporter, putative similar to
glucose transporter (Sugar carrier) STP1, Arabidopsis
thaliana, SP|P23586; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 508
Score = 28.7 bits (61), Expect = 3.9
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = -2
Query: 250 MIV*TFIIFILWAFLVWFQTIAFITFSLIFFMIATVVINKLNLISFFIFCFTLDNFSIMT 71
++V FI + AF + + ++ S IF + + + IF F + +M
Sbjct: 386 IVVVLFICIYVAAFAWSWGPLGWLVPSEIFPLEIRSAAQSITVSVNMIFTFLIAQVFLMM 445
Query: 70 LT--KFGRFVFIAFCVF*ISSF 11
L KFG F+F AF V +S F
Sbjct: 446 LCHLKFGLFIFFAFFVVVMSIF 467
>At3g61415.1 68416.m06878 SKP1 family protein low similarity to
SP|P52285 Glycoprotein FP21 precursor {Dictyostelium
discoideum}; contains Pfam profile PF01466: Skp1 family,
dimerisation domain
Length = 351
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 80 AKIIEGKTKDEKRNQVKLIDDYGSDHKENETKSNKSD 190
A+IIEGKT +E R L DD + K K+ D
Sbjct: 128 ARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTMDD 164
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase family
protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 149 SDHKENETKSNKSDRLKPYKKSPKDENDKCSDNHKQ 256
SD N S KSD K S K + D CS + K+
Sbjct: 1176 SDGDSNSKSSKKSDGDSNSKSSKKSDGDSCSKSQKK 1211
>At1g66640.1 68414.m07572 expressed protein
Length = 416
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 515 EQGKKNMITGRKNSPKICKPSDSSDSDDGTLKNISIFWHSRWWAQPYISM 664
E G+K+++T R +SP++ SD D+G + I W W P + +
Sbjct: 3 EDGEKHVLTKRSSSPEL---SDKRSGDEGDWRRIP-EWRHLWKYVPRLDL 48
>At1g79890.1 68414.m09334 helicase-related similar to CHL1 potential
helicase protein (GI:2632247) [Homo sapiens]; similar to
helicase GB:AAB06962 [Homo sapiens]
Length = 882
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Frame = +2
Query: 62 FSKGHYAKII--EGKTKDEKRNQVKLIDDYGSDHKENETKSNKSDRLKPYK----KSPKD 223
FS +AK + EG+ DE +Q L+D+Y S ++ + + + KP + S +D
Sbjct: 111 FSLRKHAKEVFTEGEKADELNDQEFLLDEYES--QDESSPGGGNSKRKPARGFDSSSSED 168
Query: 224 ENDK--CSDNHK 253
E D+ CSD+ +
Sbjct: 169 EEDENDCSDDEQ 180
>At1g10680.1 68414.m01214 P-glycoprotein, putative similar to
P-glycoprotein GI:4204793 from [Solanum tuberosum]
Length = 1227
Score = 28.3 bits (60), Expect = 5.1
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -2
Query: 235 FIIFILWAFLVWFQTI 188
F++F+ WA L+WF +I
Sbjct: 277 FVLFLSWALLIWFTSI 292
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 83 KIIEGKTKDEKRNQVKLIDDYGSDHKENETKSNKSDRLKPYKKSPKDENDK 235
++IE K+EK + I+D KE E K K KK K+E ++
Sbjct: 458 RLIEA-LKEEKEEAKRRIEDEEKKKKEEEEIKRKKREEKKIKKEEKEEKEE 507
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 140 DYGSDHKENETKSNKSDRLKP--YKKSPKDENDKCSDNH 250
+YG D + N++ + P Y +SP ++ ++ S NH
Sbjct: 202 EYGRDRRGNDSPRRRERVASPTKYSRSPNNKRERMSPNH 240
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 140 DYGSDHKENETKSNKSDRLKP--YKKSPKDENDKCSDNH 250
+YG D + N++ + P Y +SP ++ ++ S NH
Sbjct: 243 EYGRDRRGNDSPRRRERVASPTKYSRSPNNKRERMSPNH 281
>At3g43930.1 68416.m04702 expressed protein predicted proteins,
Arabidopsis thaliana; expression supported by MPSS
Length = 404
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Frame = +2
Query: 98 KTKDEK--RNQVKLIDDYGSDHK---ENETKSNKSDRLKPYKKSPK 220
KT +EK +N V++ DD D + EN K + +DR +P+K+ K
Sbjct: 162 KTLEEKPTQNLVQMSDDLARDLRTMIENLGKESPTDRTRPHKERQK 207
>At2g26470.1 68415.m03176 expressed protein contains PF02586:
Uncharacterized ACR, COG2135; weak similarity to NF-M
protein (GI:205688) [Rattus norvegicus]
Length = 487
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 149 SDHKENETKSNKSDRLKPYKKSPKDENDKCSDNHKQM 259
+D + ETKS ++ + KK P E D SD+ K++
Sbjct: 254 TDEGDKETKSTDANIIVDLKKEPTAEKDTFSDSIKKI 290
>At2g20570.1 68415.m02402 golden2-like transcription factor (GLK1)
identical to golden2-like transcription factor
GI:13311003 from [Arabidopsis thaliana]; contains Pfam
profile: PF00249 Myb-like DNA-binding domain
Length = 420
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 161 ENETKSNKSDRLKPYKKSPKDENDKCSDNHKQMAYKMT*TFSLH 292
E T SDR + Y S +N++ S+N + K+ T LH
Sbjct: 120 ETVTYDGDSDRKRKYSSSASSKNNRISNNEGKRKVKVDWTPELH 163
>At5g55660.1 68418.m06940 expressed protein similar to unknown
protein (pir||T08929)
Length = 778
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 92 EGKTKDEKRNQVKLIDDYGSDHKENETKSNKSDRLKPYKKSPKDENDK 235
E D+K ++ + +D D KE+ KSNK + K K K ++D+
Sbjct: 269 EESNDDDKEDEKEESNDDKEDKKEDIKKSNKRGKGKTEKTRGKTKSDE 316
>At2g47620.1 68415.m05941 SWIRM domain-containing protein /
DNA-binding family protein contains similarity to
SWI/SNF complex 170 KDa subunit [Homo sapiens]
gi|1549241|gb|AAC50694; contains Pfam domains PF04433:
SWIRM domain, PF00249: Myb-like DNA-binding domain
Length = 512
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 101 TKDEKRNQVKLIDDYGSDHKENETKSNKSDRL 196
T+DE QV+ G +H+E ET+ K DR+
Sbjct: 289 TEDENTEQVQTD---GQEHEETETREEKEDRV 317
>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
putative / glycine decarboxylase, putative / glycine
cleavage system P-protein, putative strong similarity to
SP|P26969 Glycine dehydrogenase [decarboxylating],
mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
contains Pfam profile PF02347: Glycine cleavage system
P-protein
Length = 1044
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 149 SDHKENETKSNKSDRLKPYKKSPKDENDKCSDNHKQMA 262
S +++T+S D LKP P+ N D QMA
Sbjct: 63 SGRNQHQTRSISVDALKPSDTFPRRHNSATPDEQAQMA 100
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,000,789
Number of Sequences: 28952
Number of extensions: 226554
Number of successful extensions: 1102
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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