Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0811
         (389 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54R06 Cluster: Putative uncharacterized protein; n=1; ...    36   0.37 
UniRef50_A7ARU9 Cluster: Putative uncharacterized protein; n=1; ...    32   4.5  

>UniRef50_Q54R06 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 270

 Score = 35.5 bits (78), Expect = 0.37
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = -2

Query: 319 NVFQENIIKYIKILGTRMFSLIRTQCIENPL-LRVNVLSRASVRLLT*IYPIIFLDSFRG 143
           N+FQEN+   I+ +     ++I+T+CI +   L    +S    + L  + PI F +SF  
Sbjct: 62  NIFQENLKSVIEKIDYYGLTIIKTECICSMCNLETKRISFQHFKFLESLIPIQFQNSFHY 121

Query: 142 SHKLAQKENPLLINTSLN 89
            +KL   E   LI T+LN
Sbjct: 122 VNKLNDIEYK-LIKTNLN 138


>UniRef50_A7ARU9 Cluster: Putative uncharacterized protein; n=1;
           Babesia bovis|Rep: Putative uncharacterized protein -
           Babesia bovis
          Length = 256

 Score = 31.9 bits (69), Expect = 4.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 153 ESKKIIGYIYVRSLTDARDRTLTLNNGFSIHCVRINENIL 272
           E+  +  Y+Y  S  DA  R +T N  + IH  ++N N+L
Sbjct: 39  EAMDMAQYLYAESGFDAEGRVVTNNFKYQIHSSKVNPNVL 78


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 288,604,938
Number of Sequences: 1657284
Number of extensions: 5089348
Number of successful extensions: 8521
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8518
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 16143318346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)