Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0811
         (389 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    27   0.087
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    26   0.15 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    26   0.15 
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   1.1  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   1.4  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   3.3  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    21   4.3  

>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 26.6 bits (56), Expect = 0.087
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 156 SKKIIGYIYVRSLTDARDR--TLTLNNGFSIHCVRINENILVPSIFIY 293
           S +I   I+  S+TD R R  TLT N G  I    I  +IL P+   Y
Sbjct: 312 SDRIYAAIHQGSVTDERGRSITLTENEGIDILGNMIESSILSPNRTYY 359


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 25.8 bits (54), Expect = 0.15
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 81  FYRDVN*KRKSLSYRYKFSYYENN 10
           +Y++ N  +K+  Y  K  YYENN
Sbjct: 418 YYQNENMLQKNAEYSGKVGYYENN 441


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 25.8 bits (54), Expect = 0.15
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 81  FYRDVN*KRKSLSYRYKFSYYENN 10
           +Y++ N  +K+  Y  K  YYENN
Sbjct: 366 YYQNENMLQKNAEYSGKVGYYENN 389


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +1

Query: 109 VRGFLFALICD-YLGMSPKK 165
           + GFLF LICD YL +  K+
Sbjct: 13  IAGFLFLLICDSYLKIYHKE 32



 Score = 19.8 bits (39), Expect = 10.0
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +1

Query: 118 FLFALICDYLGM 153
           F FA+ CD++ +
Sbjct: 76  FFFAICCDFIAL 87


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 243 HCVRINENILVPSI 284
           H V+INENI +P I
Sbjct: 637 HTVKINENISMPYI 650


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 344 TYA*MKLLKCISRKYH*IYKNTRNKNVFIN 255
           T+A +++L  + + YH    N +   +FIN
Sbjct: 104 TFAGIEVLHVVKQCYHLQKINVQQSGIFIN 133


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 190 LLT*IYPIIFLDSFRGSHKLAQKENPLLINTSLNVLILSRR 68
           L T IY IIF D F   HK+        +    ++  LS+R
Sbjct: 173 LHTSIY-IIFFDMFYQHHKIVLDMGKNCVTYVFDLFYLSKR 212


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,240
Number of Sequences: 336
Number of extensions: 1458
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8225022
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)