Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0811
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    27   0.77 
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    26   1.8  
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    26   1.8  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   3.1  

>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 27.5 bits (58), Expect = 0.77
 Identities = 16/26 (61%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = -2

Query: 175 YPIIFLD-SFR-GSHKLAQKENPLLI 104
           +PI  LD S R GS+KL++KENP LI
Sbjct: 893 FPIDNLDMSMRTGSYKLSEKENPKLI 918


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 307 ENIIKYIKILGTRMFSLIRTQCIENPLLRVNVLSRASVRLLT*IYPIIFLD 155
           EN+   I +L  ++  L +    ++P       +   +RLLT + PIIF D
Sbjct: 61  ENLQTIIAVLWDKLEDLQKETLFDDPAAPTTKCALNCMRLLTRLMPIIFED 111


>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 307 ENIIKYIKILGTRMFSLIRTQCIE 236
           +NI+K IK+ GT +  L+  +CIE
Sbjct: 241 KNIVKIIKLGGTHIQPLLLKKCIE 264


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = -2

Query: 199 SVRLLT*IYPIIFLDSFRGSHKLAQKENPLLINTSLNVL 83
           S +++T  YP++  +S R +  L  K+N  +I+ + N++
Sbjct: 330 SAQIVTLPYPLLLQESARNALNLTLKDNICIIDEAHNLI 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,287,940
Number of Sequences: 5004
Number of extensions: 23905
Number of successful extensions: 29
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)