Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0811
         (389 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44455| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_40230| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_38649| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_13435| Best HMM Match : Herpes_glycop (HMM E-Value=1.1)             26   9.5  

>SB_44455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 81  FYRDVN*KRKSLSYRYKFSYYENNLV 4
           FY+++  +RK L + Y FSY  N+LV
Sbjct: 59  FYKEIL-RRKGLGFMYVFSYKNNSLV 83


>SB_40230| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +1

Query: 61  SIHVAIELRHLNLYL*VRGFLFALICDYLGMSPK 162
           S+H  +E RH++L+  V  ++  L+ +++G + K
Sbjct: 23  SLHTTVEFRHIHLHQGVYVYVSVLVNEHIGHAEK 56


>SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1191

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -2

Query: 310  QENIIKYIKILGTRMFSLIRTQCIENPLLRVNVLSRASVRLL 185
            Q  +I+ +KIL     ++I T  ++NP L+  ++  A + +L
Sbjct: 1045 QNTVIEKLKILTQEHIAVIATSLLQNPSLKSLIIFSAGIDVL 1086


>SB_38649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +1

Query: 61  SIHVAIELRHLNLYL*VRGFLFALICDYLGMSPK 162
           S+H  +E RH++L+  V  ++  L+ +++G + K
Sbjct: 346 SLHTTVEFRHIHLHQGVYVYVSVLVNEHIGHAEK 379


>SB_13435| Best HMM Match : Herpes_glycop (HMM E-Value=1.1)
          Length = 319

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +1

Query: 1   RHEVVLIVAEFVSIAQ*FSFSIHVAIELRHLNLYL*VRGFLFALICDYLGMS 156
           RH VV++VA  +   +    +  + I L  L+LY+ V  F F +    LG++
Sbjct: 152 RHSVVVVVASVIQSLKPMYSNCILLILLFQLSLYIGVAIFCFMISLAQLGIT 203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,726,136
Number of Sequences: 59808
Number of extensions: 154078
Number of successful extensions: 272
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)