Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0811
         (389 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36630.2 68417.m05198 expressed protein                             27   4.5  
At4g36630.1 68417.m05199 expressed protein                             27   4.5  
At4g25750.1 68417.m03707 ABC transporter family protein Bactroce...    27   5.9  

>At4g36630.2 68417.m05198 expressed protein
          Length = 950

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -2

Query: 241 IENPLLRVNVLSRASVRLLT*IYPIIFLDSFRGSHKLAQKENPLLINTSLNVLIL 77
           I+NP     +  R  VRLL   YP+I     +   +L +  N +++    +V +L
Sbjct: 239 IQNPYAIALLPRRVEVRLLRSPYPLIQTIVLQNIRRLVKSNNAVIVGLDNSVYVL 293


>At4g36630.1 68417.m05199 expressed protein
          Length = 519

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -2

Query: 241 IENPLLRVNVLSRASVRLLT*IYPIIFLDSFRGSHKLAQKENPLLINTSLNVLIL 77
           I+NP     +  R  VRLL   YP+I     +   +L +  N +++    +V +L
Sbjct: 239 IQNPYAIALLPRRVEVRLLRSPYPLIQTIVLQNIRRLVKSNNAVIVGLDNSVYVL 293


>At4g25750.1 68417.m03707 ABC transporter family protein Bactrocera
           tryoni membrane transporter (white) gene, PID:g3676298
          Length = 577

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 90  FKLVFISKGFSFCANL*LPRNESK 161
           F L+ +S+ F+F A+L LP+N SK
Sbjct: 98  FPLLTVSETFTFSASLLLPKNLSK 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,233,117
Number of Sequences: 28952
Number of extensions: 109052
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)