Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0808
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.4  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   1.9  
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    27   3.3  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   7.7  
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch...    25   7.7  
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    25   7.7  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = -3

Query: 661 PRPRAPQ*WRPSLWKLSSEHNHDRVNILRLKMGLILDF 548
           P+P  P+  RP+L   SS H++D+ ++++ +  +  D+
Sbjct: 761 PQPARPESTRPALAPPSSSHSNDKYDVIQERPKISYDW 798


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +2

Query: 8    SYVIPVSFPINQTTRYECHYRKTFYVYLVFF*CKT 112
            +Y +P+++ +  +T Y+CH  +   ++L     KT
Sbjct: 1764 NYWVPINYSVAASTAYDCHLYEQSLLFLTIHNTKT 1798


>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 13/58 (22%)
 Frame = -2

Query: 518 CGFPSDYSRVIPISTDTTGC*RAIM------FIGLAKVS-------IERKANPFSKRK 384
           CGF    S ++P+  D   C   IM      F+GL K S         + A PFSKR+
Sbjct: 171 CGFSVIRSNLVPVKEDEYRCDSKIMNFKDLLFLGLGKASQILQTFNFRKLAFPFSKRR 228


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 543  YASPSAHGLRVSFRLQPSNPNLY 475
            Y  P+A G RV    QPS+PN Y
Sbjct: 935  YHPPTASGTRVPPVQQPSHPNPY 957


>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
           Spo14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 426 LSQTYKHNRPLTTSSISRD 482
           LSQ YKH+ P+T   +S D
Sbjct: 291 LSQVYKHSLPVTDMQLSPD 309


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 129 WTFWTLGVLYSFQRKIGL 182
           W  W LGV+YS    IG+
Sbjct: 312 WVPWVLGVIYSLVTPIGM 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,808
Number of Sequences: 5004
Number of extensions: 52738
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)