Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0808
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0759 + 27008772-27009571,27010457-27010576,27011683-270119...    29   3.4  
10_08_0743 + 20249478-20250021,20250673-20250740,20250923-20250964     29   4.5  
07_03_0200 - 15016084-15016342,15016814-15016869,15016963-150179...    28   6.0  

>11_06_0759 +
           27008772-27009571,27010457-27010576,27011683-27011957,
           27012516-27013783
          Length = 820

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 300 IPCKNKTLKMFSLLEYT*PFQPIKLNSQLSF*KWIGFTFD 419
           I CK  +L+   L +   P + +++  + SF K  GFTFD
Sbjct: 669 ILCKMSSLQRLVLTQVHMPIKQLEITKEASFSKLNGFTFD 708


>10_08_0743 + 20249478-20250021,20250673-20250740,20250923-20250964
          Length = 217

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 55  RVPLPQNILCI-LSFFLMQNPALTDFGLFGLSAFCT 159
           ++P  +  +C   +F  +  P L DFG F L+ FC+
Sbjct: 53  QIPPSEGRICFCFAFAFLPPPDLADFGWFSLALFCS 88


>07_03_0200 -
           15016084-15016342,15016814-15016869,15016963-15017960,
           15018707-15018768,15019242-15019274,15019697-15019881,
           15020033-15020133,15020783-15020795,15021216-15021319,
           15021593-15021693,15022773-15022849,15022965-15023021,
           15023158-15023268,15023803-15023859
          Length = 737

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 424 SRSNVKPIHFQKES*LFNFIG*KGHVYSNNENILSVLFLHGIK 296
           S  N  P+H    +     IG   H+  + EN+   L+L GI+
Sbjct: 318 SEDNDLPLHHSSRNSAVPLIGFSPHIIDDRENVGKFLYLEGIE 360


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,581,077
Number of Sequences: 37544
Number of extensions: 305306
Number of successful extensions: 561
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)