Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0808
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19119| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_32522| Best HMM Match : 7tm_1 (HMM E-Value=0.00091)                 29   2.6  
SB_812| Best HMM Match : FH2 (HMM E-Value=0)                           28   6.1  

>SB_19119| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1151

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 194  TRTCQTDFSLKAVQNAESPKSPKSVNAGFCIKKKLSIHKM 75
            T    T + LK      SP SP+S ++G+C+ +   IHKM
Sbjct: 1074 TELIMTHYHLK--NEHASPPSPRSESSGWCLGEAYQIHKM 1111


>SB_32522| Best HMM Match : 7tm_1 (HMM E-Value=0.00091)
          Length = 603

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 185 CQTDFSLKAVQNAESPKSPKSVNAGFCIKKKLS--IHKMFCGSG 60
           CQ D  L  +QN  SP+ P + +A   + K ++  IH + C  G
Sbjct: 543 CQRDVPLVFLQNTTSPQRPLTADAAGQLIKDMAKMIHSVACAQG 586


>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1430

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 637 WRPSLWKLSSEHNHDRVNILRLKMGLILDFNLC 539
           WR   WK  S H H    IL L M +++   +C
Sbjct: 34  WRSWTWKTQSRHTHPTPAILCLHMLVLIKKGVC 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,807,064
Number of Sequences: 59808
Number of extensions: 365775
Number of successful extensions: 751
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)