Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0808
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67310.1 68414.m07661 calmodulin-binding protein similar to a...    31   0.53 
At2g46250.1 68415.m05751 myosin heavy chain-related contains wea...    30   1.2  
At5g52180.1 68418.m06477 expressed protein                             27   8.7  

>At1g67310.1 68414.m07661 calmodulin-binding protein similar to
           anther ethylene-upregulated calmodulin-binding protein
           ER1 GI:11612392 from[Nicotiana tabacum]
          Length = 1035

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 402 IGFTFDRDLSQTYKHNRPLTTSSISRDWDYS 494
           IG  F++++  T  HN+  T   IS DW Y+
Sbjct: 447 IGLPFEQEMRVTGAHNQKFTIQDISPDWGYA 477


>At2g46250.1 68415.m05751 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, muscle
           (Swiss-Prot:P05661) [Drosophila melanogaster]
          Length = 468

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +3

Query: 450 RPLTTSSISRDWDYSAVV*RKPAVHGQTDSHRLKSSISPIFS----LKILTRSWLCSEDN 617
           +P++ +S S       VV RKPA   QT S  +KS+   + S    LK+L R W   E N
Sbjct: 121 QPISPASCSSSSSSLQVVVRKPAF-SQTGSSAVKSASYGLGSSTKLLKVLNRIWSLEEQN 179

Query: 618 FHNDGL 635
             N  L
Sbjct: 180 TANMSL 185


>At5g52180.1 68418.m06477 expressed protein
          Length = 458

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = -2

Query: 446 MFIGLAKVSIERKANPFSKRKLTV*F 369
           +F+ L K+SIER A+  S+++L++ F
Sbjct: 162 VFVALGKISIERSASKESEKRLSLIF 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,844,693
Number of Sequences: 28952
Number of extensions: 261933
Number of successful extensions: 523
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)