Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0806
         (601 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q557G6 Cluster: Putative uncharacterized protein; n=2; ...    35   1.7  
UniRef50_Q8ILJ8 Cluster: Putative uncharacterized protein; n=1; ...    33   3.9  
UniRef50_Q6NEX5 Cluster: Putative uncharacterized protein; n=1; ...    33   6.8  

>UniRef50_Q557G6 Cluster: Putative uncharacterized protein; n=2;
            Dictyostelium discoideum AX4|Rep: Putative
            uncharacterized protein - Dictyostelium discoideum AX4
          Length = 5601

 Score = 34.7 bits (76), Expect = 1.7
 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +1

Query: 1    NIIVNERFNKIKKNMYVIFETIG--ILLNNSPLYARLSVVNLQIRTNNELMPNKLTSGGS 174
            N+I NE   + K +  +I E I   ILLNN  LY+ L +VN      N L+ N +  G S
Sbjct: 3778 NLIDNEMKIEPKPSKSLILEIIKPLILLNNDNLYSFLKIVNNDYTIPNSLI-NSIPIGWS 3836

Query: 175  CYI 183
            C I
Sbjct: 3837 CII 3839


>UniRef50_Q8ILJ8 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 1431

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = -3

Query: 146 INSLFVRICKFTTDNLAYNGLLFSKIPIVSNITYIFFFIL 27
           + +  +RICK  TD L++N +L + I   +   Y++FF+L
Sbjct: 641 VQNKLIRICKNVTDLLSWNYMLENMILSENQYIYVYFFLL 680


>UniRef50_Q6NEX5 Cluster: Putative uncharacterized protein; n=1;
           Corynebacterium diphtheriae|Rep: Putative
           uncharacterized protein - Corynebacterium diphtheriae
          Length = 206

 Score = 32.7 bits (71), Expect = 6.8
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
 Frame = +2

Query: 293 VFLFPA*SLLTYSLFQLLKYWYVSSWAQLEK-----IANTGQEQCFAEFTG*SEKRSTEK 457
           +FL P  ++L Y L    K WY  S  QLEK     I+   Q Q  A     +++R+  K
Sbjct: 117 MFLIPIVAILLYVLKVGPKQWYAPSTRQLEKQRMRQISAAHQNQLLALQASQNQQRAIAK 176

Query: 458 IRRETQWVEKNTLKL 502
             R+ +  E N++ +
Sbjct: 177 AERKRKQAELNSIAM 191


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 519,951,322
Number of Sequences: 1657284
Number of extensions: 9562904
Number of successful extensions: 20317
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20306
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42317807226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)