Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0806
         (601 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    23   2.0  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   2.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   2.0  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   3.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   7.9  

>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory
          receptor candidate 16 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 80 FSKIPIVSNITYIFFFILL 24
          +SKI IV  + Y   FI+L
Sbjct: 34 YSKIGIVQTVAYFVIFIIL 52


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 124 IRTNNELMPNKLTSGGSCYIEQVHRFNC 207
           IR N + +  K    GSC I++ HR  C
Sbjct: 66  IRRNRQYVC-KAKDEGSCIIDKTHRNQC 92


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 124 IRTNNELMPNKLTSGGSCYIEQVHRFNC 207
           IR N + +  K    GSC I++ HR  C
Sbjct: 66  IRRNRQYVC-KAKDEGSCIIDKTHRNQC 92


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = +2

Query: 536 GNLEFDALKYYII 574
           GN+ F++LKY+++
Sbjct: 303 GNVSFNSLKYFVL 315


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 1   NIIVNERFNKIKKNMYVIF 57
           N++   RF   KKN+Y  F
Sbjct: 165 NVVATGRFTFHKKNLYYSF 183


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 282 VLNSFSCSLPN 314
           ++NSFSCS P+
Sbjct: 240 LVNSFSCSCPS 250


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,393
Number of Sequences: 336
Number of extensions: 2642
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)