Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0806
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    27   2.8  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    26   3.7  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   6.4  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    25   8.5  
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    25   8.5  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    25   8.5  

>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +1

Query: 61  TIGILLNNSPLYARLSVVNLQIRTNNELMPNKLTS 165
           T+ +  NNS  YA LSV+NL  R  +E +  +LTS
Sbjct: 119 TVKVDGNNSDPYAMLSVINLNTR-RDEPVIKQLTS 152


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 137 LFVRICKFTTDNLAYNGLLFSKIPIVSNITYIFFFILLNR 18
           LF  +  FTT     NGL++  I + S +T  F+FI L +
Sbjct: 344 LFTTVYHFTTIE---NGLVYMGILVGSVLTVAFYFIYLRK 380


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 246 NACVIEFANNFIGTIKTMHLLYVTTSSAC 160
           N C+I+ A+N I  I +MH   ++    C
Sbjct: 357 NICIIDEAHNLIDAICSMHSSSISFRQVC 385


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 4   IIVNERFNKIKKNMYVIFETIGILLNNSPLYARLSVVNLQIRTNNELMPNK 156
           ++V  RF K       +FE  G L++N    +  ++ NL+    +E +PNK
Sbjct: 20  LVVFVRFKKQYIPTISVFE--GSLIDNRDTLSYFNISNLEPSERSEWLPNK 68


>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 246 NACVIEFANNFIGTIKTMHLLYVTTSSA 163
           N  +  F+NNFI   +T++L Y + S++
Sbjct: 191 NTYLYGFSNNFINISRTLNLRYPSASAS 218


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 94  YARLSVVNLQIRTNNELMPNKLTSGGSCYIEQVHRFNCSDEVI 222
           Y  LSV++  I T  +++P +   G   YI  V   N SDE +
Sbjct: 65  YIALSVLDKLITTRWKMLPKEQRLGIRNYIVAVMIKNSSDETV 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,282,223
Number of Sequences: 5004
Number of extensions: 44369
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)