Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0806
         (601 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44464| Best HMM Match : Adaptin_N (HMM E-Value=0)                   30   1.6  
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)            30   1.6  
SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   3.8  
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)               28   5.0  
SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)                 28   6.6  

>SB_44464| Best HMM Match : Adaptin_N (HMM E-Value=0)
          Length = 596

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 1   NIIVNERFNKIKKNMYVIFETIGILLNNSPLYARLSVVNLQIRTNNEL 144
           N+IV +R   +K  M V F     +  N P+Y +L  +++ IR  NEL
Sbjct: 286 NLIVQKRPEILKNEMKVFF-----VKYNDPIYVKLEKLDIMIRLANEL 328


>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
          Length = 1644

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/53 (39%), Positives = 28/53 (52%)
 Frame = +1

Query: 217  VICKLNYACVTLI*MLC**DVLF*IRFLVPCLIVINLQPIPATQVLVCELMGS 375
            V+C+L  A VT   ++C   VL     LVPC +V  L     T  +VCEL G+
Sbjct: 981  VVCELYGAFVTST-VVCECMVLL---SLVPCTVVCELYGAIVTSTVVCELYGA 1029


>SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1296

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 100 RLSVVNLQIRTNNELMPNKLTSGGSCYIEQVHRFNCSDEVICKLNYAC 243
           RL VVNLQ + +  L   +    G C + +     C DE+I ++   C
Sbjct: 135 RLDVVNLQEQLDMRLQQRQARETGICPVRRELYSQCFDELIRQVTINC 182


>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
          Length = 1249

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 440 KRSTEKIRRETQWVEKNTLKLIDRTLGSKLRLGNLEF 550
           KR+  K +R  +WV +N  KLI R +   +    ++F
Sbjct: 167 KRTLRKQKRVKKWVRRNAYKLISRHIPQDMCSSKVDF 203


>SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)
          Length = 1299

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 440 KRSTEKIRRETQWVEKNTLKLIDRTLGSKLRLGNLEF 550
           KR+  K +R  +WV +N  KLI R +   +    ++F
Sbjct: 112 KRTERKQKRVKKWVRRNAYKLISRHIPRDMCSSKVDF 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,819,637
Number of Sequences: 59808
Number of extensions: 293433
Number of successful extensions: 554
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)