Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0806
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078782-1|AAC26913.1|  361|Caenorhabditis elegans Hypothetical ...    29   3.3  
AC006830-7|AAK68613.2|  479|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z81552-4|CAB04488.2|  765|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AF078782-1|AAC26913.1|  361|Caenorhabditis elegans Hypothetical
           protein H34P18.1 protein.
          Length = 361

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = -2

Query: 600 FQKNRLS*NII*YFNASNSKLPNLSFEPNVRSINFKVFFSTH*VSRRIFSVDRFSDQPVN 421
           FQ   +  NI+ +FN++ S +   S     R I  ++FF TH +   I+   + S   V+
Sbjct: 296 FQNLTIFINILAFFNSTTSFIIYSSLSAKFRKIFAQLFFPTH-ILETIYL--KRSTNVVH 352

Query: 420 SAKHCSWP 397
           S  H S P
Sbjct: 353 SVAHASRP 360


>AC006830-7|AAK68613.2|  479|Caenorhabditis elegans Hypothetical
           protein ZK105.6 protein.
          Length = 479

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +1

Query: 76  LNNSPLYARLSVVNLQIRTNNELMPNKLTSGGSCYIEQVHRFNCSDEVI--CKLNYACVT 249
           + N   YA++SV NL    N         +G +C+   +  +N SDE I   K NY  V 
Sbjct: 247 VENFDQYAQISVKNLNKMNNLAAQKKSFINGKACFF-NIAEYNYSDEHIKYLKKNYDKVV 305

Query: 250 LI 255
            I
Sbjct: 306 KI 307


>Z81552-4|CAB04488.2|  765|Caenorhabditis elegans Hypothetical
           protein F56G4.6 protein.
          Length = 765

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
 Frame = +1

Query: 31  IKKNMYVIFETIGILLNNSPLYARLSVVNLQIRTNNE-------LMPNKLTSGGSCYIEQ 189
           IK+   VIF+ I    ++  L AR S V LQI +N++       ++   LTS  +     
Sbjct: 29  IKQMDEVIFKEIMACASDQDLAARCSSVMLQISSNSDTCDKTAAIIFKGLTSPVAAVRSN 88

Query: 190 VHRFNCSDEVICKLNYACVTLI*MLC 267
           VHR      +  K +  CV  +  LC
Sbjct: 89  VHRSWLCRIITLKNSQKCVETLLKLC 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,390,546
Number of Sequences: 27780
Number of extensions: 241039
Number of successful extensions: 485
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)