Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0806
(601 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein. 24 0.99
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 24 0.99
AF134821-1|AAD40236.1| 226|Apis mellifera hexamerin protein. 24 0.99
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 23 2.3
M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee homeobox-... 21 7.0
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.0
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.0
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.0
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.0
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.0
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.0
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.0
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.0
AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase pr... 21 9.2
>EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein.
Length = 683
Score = 24.2 bits (50), Expect = 0.99
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 119 KFTTDNLAYNGLLFSKIPIVSNITYI-FFFILLNRSLTI 6
K+TT+ L + G+ + + ITY F +LN ++I
Sbjct: 437 KYTTEELNFPGVSIESVTVDKLITYFDHFESMLNNGVSI 475
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 24.2 bits (50), Expect = 0.99
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 119 KFTTDNLAYNGLLFSKIPIVSNITYI-FFFILLNRSLTI 6
K+TT+ L + G+ + + ITY F +LN ++I
Sbjct: 437 KYTTEELNFPGVSIESVTVDKLITYFDHFESMLNNGVSI 475
>AF134821-1|AAD40236.1| 226|Apis mellifera hexamerin protein.
Length = 226
Score = 24.2 bits (50), Expect = 0.99
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 119 KFTTDNLAYNGLLFSKIPIVSNITYI-FFFILLNRSLTI 6
K+TT+ L + G+ + + ITY F +LN ++I
Sbjct: 63 KYTTEELNFPGVSIESVTVDKLITYFDHFESMLNNGVSI 101
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 23.0 bits (47), Expect = 2.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -3
Query: 116 FTTDNLAYNGLLFSKIPIVSNITYIFFFILL 24
FTTD L+YN +L + +++ TY+ I+L
Sbjct: 228 FTTDLLSYN-ILLRRHYSMNSTTYVTLTIVL 257
>M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H40. ).
Length = 74
Score = 21.4 bits (43), Expect = 7.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 298 ENEFKTKRLISIAFKL 251
EN+FKT R +S+ +L
Sbjct: 24 ENKFKTTRYLSVCERL 39
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 307 CLIVINLQPIPATQVLVC 360
CLIV L + AT V++C
Sbjct: 436 CLIVFTLFTVLATIVILC 453
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 307 CLIVINLQPIPATQVLVC 360
CLIV L + AT V++C
Sbjct: 436 CLIVFTLFTVLATIVILC 453
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 307 CLIVINLQPIPATQVLVC 360
CLIV L + AT V++C
Sbjct: 436 CLIVFTLFTVLATIVILC 453
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 307 CLIVINLQPIPATQVLVC 360
CLIV L + AT V++C
Sbjct: 436 CLIVFTLFTVLATIVILC 453
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 307 CLIVINLQPIPATQVLVC 360
CLIV L + AT V++C
Sbjct: 436 CLIVFTLFTVLATIVILC 453
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 307 CLIVINLQPIPATQVLVC 360
CLIV L + AT V++C
Sbjct: 436 CLIVFTLFTVLATIVILC 453
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 7.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 307 CLIVINLQPIPATQVLVC 360
CLIV L + AT V++C
Sbjct: 504 CLIVFTLFTVLATIVILC 521
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 7.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 307 CLIVINLQPIPATQVLVC 360
CLIV L + AT V++C
Sbjct: 504 CLIVFTLFTVLATIVILC 521
>AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase
protein.
Length = 342
Score = 21.0 bits (42), Expect = 9.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 139 ELMPNKLTSGGSCYIEQVHRFN 204
EL+P T YIEQ+ + N
Sbjct: 203 ELLPPNRTINSVVYIEQLTKLN 224
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,092
Number of Sequences: 438
Number of extensions: 2997
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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