Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0806
         (601 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62110.1 68418.m07796 hypothetical protein                          27   9.5  
At5g57180.2 68418.m07143 expressed protein ; supporting cDNA gi|...    27   9.5  
At5g57180.1 68418.m07142 expressed protein ; supporting cDNA gi|...    27   9.5  
At5g34855.1 68418.m04092 hypothetical protein                          27   9.5  

>At5g62110.1 68418.m07796 hypothetical protein
          Length = 691

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = +1

Query: 16  ERFNKIKKNMYVIFETIGILLNNSPLYARLSVVNLQIRTNNELMPNKLTSGGSCYIEQVH 195
           E  N    N+ ++F T+ + + N      LS  NL+   +N+L  N + +G S  IE ++
Sbjct: 436 ETLNSTAANLEMLFPTLDMNIVNQHQGQVLSGGNLEFANDNQLERNAILAGYS--IEDIN 493

Query: 196 RFNCSD 213
             + ++
Sbjct: 494 NLSINN 499


>At5g57180.2 68418.m07143 expressed protein ; supporting cDNA
           gi|13991645|gb|AF359387.1|AF359387
          Length = 435

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 124 IRTNNELMPNK--LTSGGSCYIEQVHRFNCSDE 216
           I+T  E   ++  + SGG CY  ++ +F+ SDE
Sbjct: 134 IQTKTEFFSDQKEVNSGGDCYGGEIEKFDFSDE 166


>At5g57180.1 68418.m07142 expressed protein ; supporting cDNA
           gi|13991645|gb|AF359387.1|AF359387
          Length = 424

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 124 IRTNNELMPNK--LTSGGSCYIEQVHRFNCSDE 216
           I+T  E   ++  + SGG CY  ++ +F+ SDE
Sbjct: 134 IQTKTEFFSDQKEVNSGGDCYGGEIEKFDFSDE 166


>At5g34855.1 68418.m04092 hypothetical protein
          Length = 425

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -2

Query: 594 KNRLS*NII*YFNASNSKLPNLSFEPNVRSINFKVFFSTH*VS 466
           K RLS  ++ Y    +  L NL FE   R++NF   F+ H VS
Sbjct: 214 KMRLSELLLLYNALHDFFLDNLGFEQVDRNVNFGAVFAHHFVS 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,310,931
Number of Sequences: 28952
Number of extensions: 209302
Number of successful extensions: 376
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)