Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0805
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 126 3e-30
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 126 3e-30
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 90 2e-19
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 79 5e-16
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 33 0.024
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 25 8.5
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 25 8.5
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 126 bits (303), Expect = 3e-30
Identities = 55/91 (60%), Positives = 67/91 (73%)
Frame = +2
Query: 8 SEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQ 187
SE A+GGIY VLN++RGHVF E Q GTP++ +KAYLPVNESFGFT +LR T GQAFPQ
Sbjct: 736 SENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQAFPQ 795
Query: 188 CVFDHWQVLPGDPCEPQSKPYNVYRKRERGK 280
VFDHW + GDP +P SKP + + + K
Sbjct: 796 LVFDHWSPMSGDPLDPTSKPGQIVCEARKRK 826
Score = 30.7 bits (66), Expect = 0.17
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +1
Query: 199 PLAGPPWRPVRTSEQALQRVQETRKRKGLKEGLP 300
P++G P P TS+ Q V E RKRKGLKE +P
Sbjct: 803 PMSGDPLDP--TSKPG-QIVCEARKRKGLKENVP 833
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 126 bits (303), Expect = 3e-30
Identities = 55/91 (60%), Positives = 67/91 (73%)
Frame = +2
Query: 8 SEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQ 187
SE A+GGIY VLN++RGHVF E Q GTP++ +KAYLPVNESFGFT +LR T GQAFPQ
Sbjct: 736 SENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQAFPQ 795
Query: 188 CVFDHWQVLPGDPCEPQSKPYNVYRKRERGK 280
VFDHW + GDP +P SKP + + + K
Sbjct: 796 LVFDHWSPMSGDPLDPTSKPGQIVCEARKRK 826
Score = 30.7 bits (66), Expect = 0.17
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +1
Query: 199 PLAGPPWRPVRTSEQALQRVQETRKRKGLKEGLP 300
P++G P P TS+ Q V E RKRKGLKE +P
Sbjct: 803 PMSGDPLDP--TSKPG-QIVCEARKRKGLKENVP 833
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 90.2 bits (214), Expect = 2e-19
Identities = 39/73 (53%), Positives = 52/73 (71%)
Frame = +2
Query: 29 IYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQ 208
IY +L RRRGHV ++ G+P+++V+A +PV +S GF DLR +T GQA Q VFDHWQ
Sbjct: 859 IYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQ 918
Query: 209 VLPGDPCEPQSKP 247
V+PGDP + KP
Sbjct: 919 VVPGDPLDKSIKP 931
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 145 CRFAFQHRRTGLPAVRIRPLAGPPWRPVRTSEQALQRVQETRKRKGLKE 291
C+ F H + + + P P R S+ A + +TR+RKGL E
Sbjct: 910 CQMVFDHWQVVPGDPLDKSIKPKPLEPARGSDLARDFLIKTRRRKGLVE 958
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 79.0 bits (186), Expect = 5e-16
Identities = 36/74 (48%), Positives = 51/74 (68%)
Frame = +2
Query: 5 TSEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFP 184
TSEV +G +YGV+++RRG V +E GTP FIVKA +PV ESFGF ++ T G A+P
Sbjct: 874 TSEV-LGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFAVEILKRTSGAAYP 932
Query: 185 QCVFDHWQVLPGDP 226
Q +F +++L +P
Sbjct: 933 QLIFHGFEMLDENP 946
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 33.5 bits (73), Expect = 0.024
Identities = 20/84 (23%), Positives = 44/84 (52%)
Frame = +2
Query: 23 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 202
GG+ G L++R+ + + F ++A +P+N F +++D+R+ T G+ + +
Sbjct: 691 GGVIGNLDKRKATIVDSD--TDEDEFTLQAEVPLNSMFSYSSDIRALTKGKG--EFSMEF 746
Query: 203 WQVLPGDPCEPQSKPYNVYRKRER 274
+ LP P Q + + Y K+++
Sbjct: 747 LKYLPA-PKYVQKELVDAYNKQQQ 769
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = -2
Query: 443 SHLRVCFNMMRNM---C*XK*TCVKRFPYRYVFLICFNYVV 330
SH +C N + + C TC+ R YRY F+ + V+
Sbjct: 196 SHCHLCDNCVEYLDHHCIWLNTCIGRRNYRYYFIFLLSVVL 236
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 141 LLPICVPTPADRPSRSAYSTIGRS 212
+LP+ + TPA P + YS G S
Sbjct: 109 VLPLSINTPAQWPEKEVYSLQGTS 132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,196
Number of Sequences: 5004
Number of extensions: 50798
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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