Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0805
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0103 + 1082077-1082167,1083037-1085477 118 4e-27
02_04_0017 + 18937774-18937864,18938505-18940945 118 5e-27
01_06_0662 + 30987187-30987277,30987825-30990214 113 1e-25
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 98 5e-21
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 94 7e-20
03_05_0511 + 25056018-25059107 72 3e-13
02_04_0148 - 20198407-20201424 60 1e-09
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 33 0.23
02_05_0600 - 30273080-30274692,30274709-30274949 31 0.93
01_04_0109 + 16112581-16112934 30 1.6
11_01_0513 - 3977031-3977328,3977425-3977469,3977553-3977629,397... 29 2.8
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300... 29 3.8
09_06_0142 - 21107878-21109104 28 5.0
01_01_0267 + 2201404-2202501 28 5.0
01_06_0456 + 29521282-29522064 28 6.6
11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195 27 8.7
06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499 27 8.7
05_01_0538 + 4646772-4647059,4647462-4647542,4647819-4647890,464... 27 8.7
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 118 bits (284), Expect = 4e-27
Identities = 51/78 (65%), Positives = 63/78 (80%)
Frame = +2
Query: 11 EVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQC 190
E A+GGIYGVLN++RGHVFEE Q GTP++ +KAYLPV ESFGF++ LR+ T GQAFPQC
Sbjct: 738 ENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSQLRAATSGQAFPQC 797
Query: 191 VFDHWQVLPGDPCEPQSK 244
VFDHW ++ DP E S+
Sbjct: 798 VFDHWDMMTSDPLEVSSQ 815
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 223 PVRTSEQALQRVQETRKRKGLKE 291
P+ S QA Q V + RKRKGLKE
Sbjct: 809 PLEVSSQANQLVLDIRKRKGLKE 831
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 118 bits (283), Expect = 5e-27
Identities = 51/78 (65%), Positives = 63/78 (80%)
Frame = +2
Query: 11 EVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQC 190
E A+GGIYGVLN++RGHVFEE Q GTP++ +KAYLPV ESFGF++ LR+ T GQAFPQC
Sbjct: 738 ENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSQLRAATSGQAFPQC 797
Query: 191 VFDHWQVLPGDPCEPQSK 244
VFDHW ++ DP E S+
Sbjct: 798 VFDHWDMMTSDPLEAGSQ 815
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 223 PVRTSEQALQRVQETRKRKGLKE 291
P+ QA VQ+ RKRKGLKE
Sbjct: 809 PLEAGSQASTLVQDIRKRKGLKE 831
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 113 bits (271), Expect = 1e-25
Identities = 52/90 (57%), Positives = 66/90 (73%)
Frame = +2
Query: 11 EVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQC 190
E A+GGIY VLN++RGHVFEE Q GTP++ +KAYLPV ESFGFT+ LR+ T GQAFP
Sbjct: 736 ENALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFTSTLRAATSGQAFPLF 795
Query: 191 VFDHWQVLPGDPCEPQSKPYNVYRKRERGK 280
VFDHW++L DP EP ++ + RG+
Sbjct: 796 VFDHWEMLSVDPLEPGTRQLTLSWISARGR 825
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 97.9 bits (233), Expect = 5e-21
Identities = 47/94 (50%), Positives = 61/94 (64%), Gaps = 3/94 (3%)
Frame = +2
Query: 11 EVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQC 190
+ AVG +YGVLN R G + EES+ GTP+ ++ YLPV +SF FT LR+ T GQAFPQC
Sbjct: 748 KTAVGNVYGVLNSRNGELVEESERTGTPLSNLRFYLPVAKSFDFTEKLRAETSGQAFPQC 807
Query: 191 VFDHWQVLPGDPCEPQSKPYNV---YRKRERGKD 283
+F HWQ + DP + S+ V RKR+ KD
Sbjct: 808 IFHHWQTMRSDPFQEGSEAAKVITDIRKRKGLKD 841
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 94.3 bits (224), Expect = 7e-20
Identities = 42/71 (59%), Positives = 52/71 (73%)
Frame = +2
Query: 20 VGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFD 199
V IY VL+RRRGHV + GTP+++VKA+LPV ESFGF DLR +T GQAF VFD
Sbjct: 867 VSAIYTVLSRRRGHVTADVPKPGTPIYVVKAFLPVIESFGFETDLRYHTQGQAFCLSVFD 926
Query: 200 HWQVLPGDPCE 232
HW ++PGDP +
Sbjct: 927 HWAIVPGDPLD 937
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 72.1 bits (169), Expect = 3e-13
Identities = 33/69 (47%), Positives = 42/69 (60%)
Frame = +2
Query: 20 VGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFD 199
+G Y VL+R+R V +E GT +F V AYLPV ES GF+ +LRS T G A V
Sbjct: 904 LGATYAVLSRKRARVLKEEMQEGTSLFTVHAYLPVAESVGFSNELRSVTAGAASALLVLS 963
Query: 200 HWQVLPGDP 226
HW+ +P DP
Sbjct: 964 HWEAIPEDP 972
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/69 (42%), Positives = 37/69 (53%)
Frame = +2
Query: 20 VGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFD 199
+G +Y VL R V +E GT +F V AYL V ES F+ LR+ T G A F
Sbjct: 880 LGSMYAVLGNCRARVLKEEMQEGTSLFTVHAYLSVAESSEFSKKLRNATAGAASALLAFS 939
Query: 200 HWQVLPGDP 226
HW+ +P DP
Sbjct: 940 HWETVPQDP 948
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 23 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 175
G + G +N+R+G + Q +V ++P+N FG++ LRS T G+
Sbjct: 690 GTVTGDMNKRKGIIVGNDQEGDDT--VVVCHVPLNNMFGYSTALRSMTQGK 738
>02_05_0600 - 30273080-30274692,30274709-30274949
Length = 617
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -2
Query: 260 CTRCRACSEVRTGLQGGPANG-RIRTAGRPVRRCW 159
C RC A + TGL P G TAG RRCW
Sbjct: 469 CRRCWASTSSPTGLPSPPPTGVSACTAGLLCRRCW 503
>01_04_0109 + 16112581-16112934
Length = 117
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 126 MSRSVLLP--ICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTCTGNEKEER 281
M+ VL P + +P+PA R R+ +T R++ +++ R PTT ++ R
Sbjct: 1 MATEVLRPHNVLLPSPAQRRIRATAATHQRTANNHQSDARTKPTTAGSRRRQGR 54
>11_01_0513 -
3977031-3977328,3977425-3977469,3977553-3977629,
3977734-3977850,3978012-3978188,3978282-3978379,
3978478-3978544,3978651-3978741,3978847-3978939,
3979049-3979380,3979938-3980189
Length = 548
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = +3
Query: 159 PTPADRPSRSAYSTIGRSSL-ETRANLRASPTTCTGNEKEERIE--GRSPRLNSIFGQIV 329
P PA + ++A G+ + E ++R + +GN E+ E +SP L ++ G I
Sbjct: 68 PPPASK--KTALLDKGKEKVSEMDTSVRRTSKGISGNPSEDSNEPVAKSPTLKTVIGSIR 125
Query: 330 NYIVKAN*KNVSI 368
NYI + + I
Sbjct: 126 NYIATKKGRKIKI 138
>11_06_0768 +
27129007-27129038,27129140-27129220,27129723-27130089,
27130165-27130255,27130515-27130595,27130764-27131830,
27132060-27132071,27132465-27133209,27133210-27135244,
27135712-27135787,27135925-27136029,27137080-27137166
Length = 1592
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 129 SRSVLLPICVPTPADRPSRSAYSTIGRSSLETRANLRASPT 251
S S +P +P P D PS+ +T G S+ +N SP+
Sbjct: 19 STSARVPGVIPKPIDLPSQRGTATQGDKSMPPASNAWGSPS 59
>09_06_0142 - 21107878-21109104
Length = 408
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 250 VGLALRFARVSREDLPMVEYALREGLS-AGVGTQIGSKTER 131
V L L++ E LP++ A REG++ AGV +GS R
Sbjct: 171 VDLGLKYGANPDEVLPLLRAAQREGVAVAGVSFHVGSGASR 211
>01_01_0267 + 2201404-2202501
Length = 365
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 180 SRSAYSTIGRSSLETRAN-LRASPTTCTGNEKEERIEGRSPRLNSIFG 320
SRSAY ++ + N A+ TTC G+E+ G PR+ +FG
Sbjct: 277 SRSAYGPDKLLFIDCKKNNAAAATTTCAGDERPTT-SGAEPRVVRLFG 323
>01_06_0456 + 29521282-29522064
Length = 260
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 257 TRCRACSEVRTGLQGGPANGRIRTAGRPVRRCWNANR 147
+R C +G +GG R R AG RRC A+R
Sbjct: 10 SRAWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADR 46
>11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195
Length = 767
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 297 PRLNSIFGQIVNYIVKAN*KNVSIRKALHACLFSSTHVPHHIKA 428
PR + +++NYIV + K+ + S +PHH+K+
Sbjct: 389 PRTREEWERVLNYIVSTSEKDNDLEVMNKILFMSYNDLPHHMKS 432
>06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499
Length = 524
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 163 HRRTGLPAVRIRPLAGPPWRPVRTSEQALQRVQETRKR-KGLKE 291
H G +RIRP P V + + ++RVQE ++R G+KE
Sbjct: 151 HVVVGRHGIRIRPWPHPDPVEVMRAHRIMERVQEEQRRWYGVKE 194
>05_01_0538 +
4646772-4647059,4647462-4647542,4647819-4647890,
4648458-4649321
Length = 434
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 180 SRSAYSTIGRSSLETRANLRASPTTCTGNEKEERIEGRSPRLNSIFGQI 326
SRS + RS +R R+SP G EK I +L ++G +
Sbjct: 358 SRSRSRSRSRSRSRSRNEERSSPFGNAGKEKTAAISSNLAKLKDLYGDV 406
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,815,295
Number of Sequences: 37544
Number of extensions: 340691
Number of successful extensions: 957
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -