Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0805
(600 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 144 6e-35
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 5e-19
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33) 91 5e-19
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15) 72 3e-13
SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13) 33 0.13
SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_20934| Best HMM Match : PSI_8 (HMM E-Value=4.8) 29 3.8
SB_48281| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09) 28 5.0
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_23533| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 144 bits (348), Expect = 6e-35
Identities = 69/90 (76%), Positives = 71/90 (78%)
Frame = +2
Query: 11 EVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQC 190
E AVGGIYGVLNRRRG V EES VAGTPMFIVKAYLPV ESFGFTADLRS TGGQAFPQC
Sbjct: 728 ESAVGGIYGVLNRRRGQVLEESNVAGTPMFIVKAYLPVMESFGFTADLRSKTGGQAFPQC 787
Query: 191 VFDHWQVLPGDPCEPQSKPYNVYRKRERGK 280
VFDHWQVLPGD + S P V + K
Sbjct: 788 VFDHWQVLPGDVHDLASMPGQVVANTRKRK 817
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +1
Query: 250 QRVQETRKRKGLKEGLP 300
Q V TRKRKGLKEG+P
Sbjct: 808 QVVANTRKRKGLKEGIP 824
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 91.5 bits (217), Expect = 5e-19
Identities = 37/71 (52%), Positives = 53/71 (74%)
Frame = +2
Query: 20 VGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFD 199
V +Y VL RRRGHV +++ V G+P++ +KA++P +SFGF DLR++T GQAF VF
Sbjct: 711 VSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFH 770
Query: 200 HWQVLPGDPCE 232
HWQ++PGDP +
Sbjct: 771 HWQIVPGDPLD 781
>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
Length = 119
Score = 91.5 bits (217), Expect = 5e-19
Identities = 37/71 (52%), Positives = 53/71 (74%)
Frame = +2
Query: 20 VGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFD 199
V +Y VL RRRGHV +++ V G+P++ +KA++P +SFGF DLR++T GQAF VF
Sbjct: 21 VSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFH 80
Query: 200 HWQVLPGDPCE 232
HWQ++PGDP +
Sbjct: 81 HWQIVPGDPLD 91
>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
Length = 549
Score = 72.1 bits (169), Expect = 3e-13
Identities = 34/74 (45%), Positives = 47/74 (63%)
Frame = +2
Query: 5 TSEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFP 184
T+EV +G +Y V+ RR G V E G+ +F V+A LPV ESFGF+ ++R T G A P
Sbjct: 423 TAEV-LGRMYAVIARREGRVLSEEMKEGSDVFDVEAVLPVAESFGFSEEIRKRTSGLANP 481
Query: 185 QCVFDHWQVLPGDP 226
Q +F HW+ + DP
Sbjct: 482 QLMFSHWEAIDLDP 495
>SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)
Length = 238
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 23 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 175
G + +NRR G V G F + A +P+N+ FG+ +LRS T G+
Sbjct: 155 GTVIAGVNRRHGQVTGTDANEG--YFTLFAEVPLNDMFGYATELRSQTQGK 203
>SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +3
Query: 120 LSMSRSVLLPICVPTPADRPSRSAYSTIGRSSLETRANLRASP 248
+S + L P+ VPTPA R S + RS +TRAN+R SP
Sbjct: 157 ISSTPQTLSPVSVPTPATR------SVLKRSPGKTRANIRGSP 193
>SB_20934| Best HMM Match : PSI_8 (HMM E-Value=4.8)
Length = 252
Score = 28.7 bits (61), Expect = 3.8
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Frame = +3
Query: 108 RPTY-LSMSRSVLLPICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTCTGNEKEERI 284
RP + L + + P P+P+ R S + YST SS+ R P+ G+ +
Sbjct: 150 RPVFTLRLLIGIRSPGSHPSPSHRYSLARYSTFALSSVFARPVFILHPSIGIGSSFFRVL 209
Query: 285 EGRSPRLNSIFGQIVNYIVKAN*KNVSIRKALHACLFSSTHVPHH 419
R+PR + F I +++ + +V I K C+ S + H
Sbjct: 210 VMRNPREHPSFDDIF-FLIISTLFHVFI-KTHSECMLSGEYFSFH 252
>SB_48281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 541 QVDHVHLHNNVYQKNDIVRFKIYLVECD 458
Q + HN+VY+ + FK+YL E D
Sbjct: 54 QAAYKEWHNHVYESRPLTSFKLYLNEID 81
>SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)
Length = 283
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = -1
Query: 204 QWSNTHCGKACPPVLE--RKSAVKPNDSL 124
Q+ +CG ACPP E KS VK N L
Sbjct: 159 QYDRVYCGAACPPDFEDYMKSLVKVNGIL 187
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 66 SKSPRWQVHLCSL*RPTYLSMSRSVLLPICVPTPADRPSRSAYSTIGRSSL 218
+K P + L SL P + S S L P+P +PS S I +S++
Sbjct: 3074 NKPPEYSTVLASLSTPKEVHQSASEPLKRVSPSPGGKPSDKVSSVISQSTI 3124
>SB_23533| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 817
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 136 RFYCRFAFQHRRTGLPAVRIRPLAGPPWRPVRTSEQALQRVQETRKRKG 282
++Y A R GL + + GPP + + T E+ +R++E RK G
Sbjct: 764 KYYALKATIRVRHGLASREKKSKKGPPRKSLETREKMKKRLREIRKEFG 812
>SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1462
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 142 YCRFAFQHRRTGLPAVRIRPLAGPPWRPVRTSEQALQRVQETRKRKGLKEG 294
+CR F+ +P +R RP + PW L + +ET +RK + G
Sbjct: 349 WCRVLFEILDKHVPKIRSRPNSTLPWFDAEVIN--LLKKKETARRKAKRTG 397
>SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1318
Score = 27.5 bits (58), Expect = 8.8
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 123 SMSRSVLLPICVPTPADRPSRSAYSTIGR--SSLETRANLRASPTTC-TGNEKEERIE 287
S RSV + TP PS S ST R SS+ N R S +C +G E + I+
Sbjct: 53 SYQRSVPVSTSSSTPVSSPSNSTPSTPIRKSSSVTVTLNRRISRESCGSGRESRDSID 110
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,704,049
Number of Sequences: 59808
Number of extensions: 403661
Number of successful extensions: 1084
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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