Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0805
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical pr...   163   1e-40
M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation fact...   163   1e-40
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    88   5e-18
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        88   5e-18
Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical pr...    60   9e-10
Z83235-9|CAI79209.1|  705|Caenorhabditis elegans Hypothetical pr...    47   1e-05
AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical ...    29   3.3  
L16621-13|ABD63202.1|  141|Caenorhabditis elegans Hypothetical p...    28   4.4  
Z81519-1|CAB04216.1|  750|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AF068713-7|AAC17798.2|  359|Caenorhabditis elegans Hypothetical ...    27   7.7  

>Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical protein
            F25H5.4 protein.
          Length = 852

 Score =  163 bits (395), Expect = 1e-40
 Identities = 76/94 (80%), Positives = 81/94 (86%), Gaps = 3/94 (3%)
 Frame = +2

Query: 11   EVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQC 190
            E AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADLRSNTGGQAFPQC
Sbjct: 747  EAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQC 806

Query: 191  VFDHWQVLPGDPCEPQSKPYNVY---RKRERGKD 283
            VFDHWQVLPGDP E  +KP  +    RKR+  K+
Sbjct: 807  VFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKE 840



 Score = 33.1 bits (72), Expect = 0.16
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +1

Query: 214 PWRPVRTSEQALQRVQETRKRKGLKEGLP 300
           P  P+    +  Q V +TRKRKGLKEG+P
Sbjct: 815 PGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843


>M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation factor
            protein.
          Length = 852

 Score =  163 bits (395), Expect = 1e-40
 Identities = 76/94 (80%), Positives = 81/94 (86%), Gaps = 3/94 (3%)
 Frame = +2

Query: 11   EVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQC 190
            E AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADLRSNTGGQAFPQC
Sbjct: 747  EAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQC 806

Query: 191  VFDHWQVLPGDPCEPQSKPYNVY---RKRERGKD 283
            VFDHWQVLPGDP E  +KP  +    RKR+  K+
Sbjct: 807  VFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKE 840



 Score = 33.1 bits (72), Expect = 0.16
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +1

Query: 214 PWRPVRTSEQALQRVQETRKRKGLKEGLP 300
           P  P+    +  Q V +TRKRKGLKEG+P
Sbjct: 815 PGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
            protein 1 protein.
          Length = 974

 Score = 87.8 bits (208), Expect = 5e-18
 Identities = 36/71 (50%), Positives = 50/71 (70%)
 Frame = +2

Query: 20   VGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFD 199
            V  +Y VL +RRGHV  ++ + G+PM+ + AY+PV +SFGF  DLR +T GQAF    F 
Sbjct: 847  VAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQAFCMSAFH 906

Query: 200  HWQVLPGDPCE 232
            HWQ++PGDP +
Sbjct: 907  HWQLVPGDPLD 917


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 87.8 bits (208), Expect = 5e-18
 Identities = 36/71 (50%), Positives = 50/71 (70%)
 Frame = +2

Query: 20  VGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFD 199
           V  +Y VL +RRGHV  ++ + G+PM+ + AY+PV +SFGF  DLR +T GQAF    F 
Sbjct: 722 VAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQAFCMSAFH 781

Query: 200 HWQVLPGDPCE 232
           HWQ++PGDP +
Sbjct: 782 HWQLVPGDPLD 792


>Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical
           protein K10C3.5a protein.
          Length = 894

 Score = 60.5 bits (140), Expect = 9e-10
 Identities = 30/74 (40%), Positives = 41/74 (55%)
 Frame = +2

Query: 5   TSEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFP 184
           T+  A+G ++ VL++R+  V  E     T +F V + +PV ESF F   LR  T G A  
Sbjct: 765 TASQALGKVHAVLSQRKSKVLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASA 824

Query: 185 QCVFDHWQVLPGDP 226
           Q  F HWQV+  DP
Sbjct: 825 QLQFSHWQVIDEDP 838


>Z83235-9|CAI79209.1|  705|Caenorhabditis elegans Hypothetical
           protein K10C3.5b protein.
          Length = 705

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 24/55 (43%), Positives = 28/55 (50%)
 Frame = +2

Query: 62  VFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 226
           V  E     T +F V + +PV ESF F   LR  T G A  Q  F HWQV+  DP
Sbjct: 595 VLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 649


>AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical
           protein F02E11.1 protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 217 REDLPMVEYALREGLSAGVGTQIGSKTERLID 122
           +ED+  +EY + E  ++ +GTQ+  KT   +D
Sbjct: 232 QEDVTRIEYLIHEYQNSDIGTQMLKKTRTAVD 263


>L16621-13|ABD63202.1|  141|Caenorhabditis elegans Hypothetical
           protein ZK688.12 protein.
          Length = 141

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 7/30 (23%), Positives = 20/30 (66%)
 Frame = -3

Query: 547 TVQVDHVHLHNNVYQKNDIVRFKIYLVECD 458
           +++++ +H+   +  +ND+  F +Y ++CD
Sbjct: 76  SIEIELLHVPGILLPRNDVHHFSVYYIKCD 105


>Z81519-1|CAB04216.1|  750|Caenorhabditis elegans Hypothetical
           protein F29C12.4 protein.
          Length = 750

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 23  GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 175
           G +   L +R   +       G    I +A  P+++ FG+T++LRS T G+
Sbjct: 659 GNVVTSLTQRNALITTTDSTEGYATVICEA--PLSDMFGYTSELRSLTEGK 707


>AF068713-7|AAC17798.2|  359|Caenorhabditis elegans Hypothetical
           protein T24A6.11 protein.
          Length = 359

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -2

Query: 449 LLSHLRVCF-NMMRNMC*XK*TCVKRFPYRYVFLICFNYVV 330
           +L+ LR+C+ + +   C  + TC K FP ++V L+  ++VV
Sbjct: 290 ILTPLRICYTSCLFQHC--QITCQKNFPTKFVDLLSLSHVV 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,789,751
Number of Sequences: 27780
Number of extensions: 304715
Number of successful extensions: 801
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)