Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0805
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   2.3  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   2.3  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   2.3  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   5.3  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   7.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.2  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 539 LYCNYYFKLYF 571
           LYCN Y KLY+
Sbjct: 99  LYCNNYKKLYY 109


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 539 LYCNYYFKLYF 571
           LYCN Y KLY+
Sbjct: 99  LYCNNYKKLYY 109


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 539 LYCNYYFKLYF 571
           LYCN Y KLY+
Sbjct: 99  LYCNNYRKLYY 109


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 2   GTSEVAVGGIYGVLNRRR 55
           G    A GGIY + N+RR
Sbjct: 312 GEHTEAEGGIYDISNKRR 329


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 536 YLYCNYYFKLYFFSIVKKKK 595
           ++  NY+  LYF S+V+ ++
Sbjct: 16  FILINYFIFLYFNSLVRFRR 35


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 301 LGDLPSILSSFSFPVHVVGLALRF 230
           LG+  +++ S +FP  V  LA RF
Sbjct: 380 LGERQTLMFSATFPDEVQHLARRF 403


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,694
Number of Sequences: 438
Number of extensions: 3751
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)