Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0805
(600 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 118 3e-27
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 93 1e-19
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 93 1e-19
At5g25230.1 68418.m02991 elongation factor Tu family protein tra... 91 5e-19
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 71 4e-13
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 33 0.11
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 33 0.11
At2g40070.1 68415.m04923 expressed protein 31 0.58
At5g38660.1 68418.m04675 expressed protein similar to unknown pr... 31 0.77
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 29 2.4
At2g35490.1 68415.m04347 plastid-lipid associated protein PAP, p... 28 5.4
At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /... 27 7.2
At3g63180.1 68416.m07097 expressed protein 27 7.2
At3g50840.1 68416.m05567 phototropic-responsive NPH3 family prot... 27 9.5
At1g65910.1 68414.m07479 no apical meristem (NAM) family protein... 27 9.5
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 27 9.5
At1g03930.1 68414.m00378 protein kinase (ADK1) identical to dual... 27 9.5
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 118 bits (284), Expect = 3e-27
Identities = 50/75 (66%), Positives = 62/75 (82%)
Frame = +2
Query: 11 EVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQC 190
E A+GGIY VLN++RGHVFEE Q GTP++ +KAYLPV ESFGF++ LR+ T GQAFPQC
Sbjct: 738 EGALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSQLRAATSGQAFPQC 797
Query: 191 VFDHWQVLPGDPCEP 235
VFDHW+++ DP EP
Sbjct: 798 VFDHWEMMSSDPLEP 812
>At1g06220.2 68414.m00656 elongation factor Tu family protein similar
to Cryptosporidium parvum elongation factor-2 GB:U21667
GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 93.5 bits (222), Expect = 1e-19
Identities = 43/71 (60%), Positives = 51/71 (71%)
Frame = +2
Query: 20 VGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFD 199
V IY VL+RRRGHV + GTP +IVKA+LPV ESFGF DLR +T GQAF VFD
Sbjct: 857 VTAIYTVLSRRRGHVTSDVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFCLSVFD 916
Query: 200 HWQVLPGDPCE 232
HW ++PGDP +
Sbjct: 917 HWAIVPGDPLD 927
>At1g06220.1 68414.m00655 elongation factor Tu family protein similar
to Cryptosporidium parvum elongation factor-2 GB:U21667
GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 93.5 bits (222), Expect = 1e-19
Identities = 43/71 (60%), Positives = 51/71 (71%)
Frame = +2
Query: 20 VGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFD 199
V IY VL+RRRGHV + GTP +IVKA+LPV ESFGF DLR +T GQAF VFD
Sbjct: 857 VTAIYTVLSRRRGHVTSDVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFCLSVFD 916
Query: 200 HWQVLPGDPCE 232
HW ++PGDP +
Sbjct: 917 HWAIVPGDPLD 927
>At5g25230.1 68418.m02991 elongation factor Tu family protein
translation Elongation Factor 2, Schizosaccharomyces
pombe, PIR:T39902
Length = 973
Score = 91.1 bits (216), Expect = 5e-19
Identities = 42/71 (59%), Positives = 51/71 (71%)
Frame = +2
Query: 20 VGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFD 199
V IY VL+RRRG+V + GTP +IVKA+LPV ESFGF DLR +T GQAF VFD
Sbjct: 843 VTAIYTVLSRRRGYVTSDVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFCLSVFD 902
Query: 200 HWQVLPGDPCE 232
HW ++PGDP +
Sbjct: 903 HWAIVPGDPLD 913
>At3g22980.1 68416.m02898 elongation factor Tu family protein similar
to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 71.3 bits (167), Expect = 4e-13
Identities = 32/74 (43%), Positives = 45/74 (60%)
Frame = +2
Query: 5 TSEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFP 184
T+ +G +Y VL+RRR + +E G+ +F V AY+PV+ESFGF +LR T G A
Sbjct: 885 TAPEYLGPMYAVLSRRRARILKEEMQEGSSLFTVHAYVPVSESFGFADELRKGTSGGASA 944
Query: 185 QCVFDHWQVLPGDP 226
V HW++L DP
Sbjct: 945 LMVLSHWEMLEEDP 958
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 23 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 175
G + G +N+R+G + Q ++ A +P+N FG++ LRS T G+
Sbjct: 674 GTVAGDINKRKGIIVGNDQEGDDS--VITANVPLNNMFGYSTSLRSMTQGK 722
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 23 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 175
G + G +N+R+G + Q ++ A +P+N FG++ LRS T G+
Sbjct: 674 GTVAGDINKRKGIIVGNDQEGDDS--VITANVPLNNMFGYSTSLRSMTQGK 722
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 31.1 bits (67), Expect = 0.58
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 162 TPADRPSRSAYSTIGRSSLETRANL-RASPTTCTGNEKEERIEGRSP 299
TP RP+ TI RSS TR + AS T T N +I+ SP
Sbjct: 297 TPTSRPTLPPSKTISRSSTPTRRPIASASAATTTANPTISQIKPSSP 343
>At5g38660.1 68418.m04675 expressed protein similar to unknown
protein (pir||S75762)
Length = 286
Score = 30.7 bits (66), Expect = 0.77
Identities = 15/56 (26%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Frame = -3
Query: 286 SILSSFSFPVHVVGLALRFARVSREDLPMVEYA----LREGLSAGVGTQIGSKTER 131
+I+ ++ FP+ ++G+AL++A + + +P + Y+ LRE + + TQ+ + R
Sbjct: 126 AIMLTYGFPLSIIGMALKYAEL--KPVPCLSYSDAVKLRESCATPILTQVRNDVTR 179
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 231 NLRASPTTCTGNEKEERIEGRSPRLN-SIFGQIVNYIVKAN*KNVSIRKAL 380
NLR T+ +KE ++ PRLN I G V + + VS+R+AL
Sbjct: 62 NLRFLATSAQTRKKEAEVDSDGPRLNEKITGDYVRLVSEEGHCVVSLREAL 112
>At2g35490.1 68415.m04347 plastid-lipid associated protein PAP,
putative similar to plastid-lipid associated protein
PAP3 [Brassica rapa] GI:14248552; contains Pfam profile
PF04755: PAP_fibrillin
Length = 376
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 191 VFDHWQVLPGDPCEPQSKPYNV 256
V D W PGD EP S+P NV
Sbjct: 71 VTDEWGEKPGDANEPDSQPDNV 92
>At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase PG1 [Glycine max]
GI:5669846; contains PF00295: Glycosyl hydrolases family
28
Length = 444
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = +1
Query: 52 SWSRFRRVPGGRY-TYVHCEGL 114
S+ R R +PGGRY +++H +GL
Sbjct: 123 SYGRGRELPGGRYMSFIHGDGL 144
>At3g63180.1 68416.m07097 expressed protein
Length = 978
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +3
Query: 111 PTYLSMSRSVLLPICVPTPADRPSRSAYSTIGRSS 215
P ++ + L P+ VP+ + RP++S + +G +S
Sbjct: 539 PAFIYPANHHLQPVMVPSKSSRPTKSPHLAVGLAS 573
>At3g50840.1 68416.m05567 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 569
Score = 27.1 bits (57), Expect = 9.5
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +3
Query: 66 SKSPRWQVHLCSL*RPTY----LSMSRSVLLPICVPTPADRPSRSAYSTIGRSSLETRAN 233
SK+ W L L P + LSM SVL P V ++ I RSS + ++
Sbjct: 191 SKTELWFEDLTELSFPIFRRVILSMKSSVLSPEIVERSLLTYAKKHIPGISRSSSASSSS 250
Query: 234 LRASPTTCTGNEKEERIE 287
+S T + N++ E +E
Sbjct: 251 SSSSTTIASENQQRELLE 268
>At1g65910.1 68414.m07479 no apical meristem (NAM) family protein
similar to jasmonic acid 2 GI:6175246 from [Lycopersicon
esculentum]; similar to NAC2 (GI:6456751) {Arabidopsis
thaliana}
Length = 631
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -3
Query: 274 SFSFPVHVVGLALRFARVSREDLPMVEYALREGLSAG--VGTQIGSKTERLIDR*VGL 107
+ S+P V +AL AR+ LP V EGL+ G + + T+ ++ + + L
Sbjct: 249 TISYPPSKVDIALECARLQNRMLPPVPPLYVEGLTHNEYFGNNVANDTDEMLSKIIAL 306
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +3
Query: 114 TYLSMSRSVLLPICVPTPADRP---SRSAYSTIGRSSLETRANLRA 242
+Y S SRSV P +P RP SRS YS++ RS +++ R+
Sbjct: 212 SYSSKSRSVS-PARSISPRSRPLSRSRSLYSSVSRSQSRSKSRSRS 256
>At1g03930.1 68414.m00378 protein kinase (ADK1) identical to dual
specificity kinase 1 (ADK1) [Arabidopsis thaliana]
gi|1216484|gb|AAB47968; supported by cDNA gi:18700076
and gi:1216483. Note: differences between cDNAs in the
11th exon, possibly due to errors or alternative
splicing.
Length = 471
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 210 SSLETRANLRASPTTCTGN--EKEERIEGRSPRLNSIFGQI 326
SS TR + A+P G EK+ERI G+ R N G +
Sbjct: 304 SSSRTRNHTTANPGLTAGASLEKQERIAGKETRENRFSGAV 344
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,685,441
Number of Sequences: 28952
Number of extensions: 267685
Number of successful extensions: 685
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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