Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0804
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    27   2.2  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    27   2.2  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    26   3.9  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    25   9.0  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   9.0  

>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -1

Query: 232 LLNLTKQARRVHTENYLRD*PWTTTRPVIKAHTAHR 125
           L NLT  ARR+   +YLR  P   + P    HTA R
Sbjct: 326 LTNLTPAARRLVARSYLRS-PLHGSSPSASRHTALR 360


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +3

Query: 198 CTLRACLVRFNKLSTQNQHYESDGNGLLLERGKVGASLEVPLRG*VFDPK-ASLNLWRVE 374
           CT   C V FN   +Q  H++SD +   L+R KV ASL  PL   VF  K  S+     E
Sbjct: 7   CT--TCTVAFNNAESQKIHWKSDWHHYNLKR-KV-ASLP-PLSAEVFAGKILSIQKQNEE 61

Query: 375 LRRNISIY 398
           +++    Y
Sbjct: 62  VQKKAEFY 69


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 137 VGFYYRPGRCPWLIT*IILG 196
           V  +YR  R PW+I  +ILG
Sbjct: 84  VAAFYRSSRMPWIIFIVILG 103


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 379 GGIFQYIIKHFFLRWVDE 432
           GGI  YI  HF  +W+ E
Sbjct: 126 GGIVFYIFNHFLHKWLHE 143


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = -2

Query: 393 LKYSSLILPSINLMTLLDRR 334
           LKYSSL    IN   LLDRR
Sbjct: 712 LKYSSLKNELINAQNLLDRR 731


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,165
Number of Sequences: 5004
Number of extensions: 53251
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)