Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0804
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47152| Best HMM Match : Vicilin_N (HMM E-Value=5.4)                 31   0.58 
SB_42273| Best HMM Match : 7tm_1 (HMM E-Value=5.2e-07)                 29   4.1  
SB_58652| Best HMM Match : UVR (HMM E-Value=7.4)                       29   4.1  
SB_1812| Best HMM Match : 7tm_1 (HMM E-Value=6.7e-07)                  29   4.1  
SB_53462| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_11074| Best HMM Match : efhand (HMM E-Value=1.79366e-43)            27   9.5  

>SB_47152| Best HMM Match : Vicilin_N (HMM E-Value=5.4)
          Length = 330

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -1

Query: 208 RRVHTENYLRD*PWTTTRPVIKAHTAHRQIGNIQYCKQLQSFRLFSH 68
           RR H+ +Y R   +   RP+       RQ+   Q CK  QS R+ SH
Sbjct: 190 RRRHSHHYRRICRYRQRRPLTPKRPKTRQLPPEQRCKSTQSPRILSH 236


>SB_42273| Best HMM Match : 7tm_1 (HMM E-Value=5.2e-07)
          Length = 259

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 17  KRIDAHFLTH*TLITDAMREQPKTL*LFTVLNITYLTVSSVGFYYR 154
           K  +A F  H TL     RE  KTL + TVL++T      + F+++
Sbjct: 143 KHQNAQFQGHSTLAQQRERELAKTLFIVTVLSLTTWAPDMLWFFFQ 188


>SB_58652| Best HMM Match : UVR (HMM E-Value=7.4)
          Length = 88

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 426 YPSKKKMLYNILKYSSLILPSINLMTLLDRRPNRAEVPPNS 304
           Y    K L+N + Y +L+L + NL     R   + E PPN+
Sbjct: 30  YIEVMKQLWNQMGYQNLVLKAQNLRDQASRLEKQQEHPPNT 70


>SB_1812| Best HMM Match : 7tm_1 (HMM E-Value=6.7e-07)
          Length = 259

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 17  KRIDAHFLTH*TLITDAMREQPKTL*LFTVLNITYLTVSSVGFYYR 154
           K  +A F  H TL     RE  KTL + TVL++T      + F+++
Sbjct: 143 KHQNAQFQGHSTLAQQRERELAKTLFIVTVLSLTTWAPDMLWFFFQ 188


>SB_53462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = -1

Query: 313 SKLAPTLPRSNSNPFPSDS*C*FCVDSLLNLTKQARRVHTENYLRD*PWTTT 158
           S L+PT P   +NPFP  +   FC   L  L  Q    H  + LR  P  +T
Sbjct: 30  SSLSPTDPTLRANPFPEVTDL-FCRLPLPTLFYQPEAAHLGDLLRGDPLEST 80


>SB_11074| Best HMM Match : efhand (HMM E-Value=1.79366e-43)
          Length = 779

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 366 RVELRRNISIYYKAFFS*MGRRAHSPPGVKWL 461
           + +L R+ S+ Y  F   + +R  +P G+KWL
Sbjct: 155 KAKLNRDGSVNYLEFLEKLHQRGGTPDGLKWL 186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,564,254
Number of Sequences: 59808
Number of extensions: 400924
Number of successful extensions: 653
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)