Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0804
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05650.1 68416.m00629 disease resistance family protein conta...    27   7.8  
At1g26240.1 68414.m03201 proline-rich extensin-like family prote...    27   7.8  
At1g07520.1 68414.m00805 scarecrow transcription factor family p...    27   7.8  

>At3g05650.1 68416.m00629 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-4A protein
           [Lycopersicon esculentum] gi|3097197|emb|CAA73187
          Length = 868

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 95  LFTVLNITYLTVSSVGFYYRPGRCP 169
           LFTVLN+ +LT   + + Y  G+ P
Sbjct: 112 LFTVLNLRFLTTLDLSYNYFSGQIP 136


>At1g26240.1 68414.m03201 proline-rich extensin-like family protein
           similar to hydroxyproline-rich glycoprotein precursor
           gi|727264|gb|AAA87902; contains proline-rich extensin
           domains, INTERPRO:IPR002965
          Length = 478

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +3

Query: 441 PPGVKWLLEPIDIYNVNAPPTLRYKF*SSKGPQYAYNGCPNP 566
           PP   +   P   Y  N+PP   Y + S   P Y Y+  P P
Sbjct: 122 PPPYVYKSPPPPPYVYNSPPPPPYVYKSPPPPPYVYSSPPPP 163



 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +3

Query: 441 PPGVKWLLEPIDIYNVNAPPTLRYKF*SSKGPQYAYNGCPNP 566
           PP   +   P   Y  ++PP   Y + S   P Y YN  P P
Sbjct: 302 PPPYVYKSPPPPPYVYSSPPPPPYVYKSPPPPPYVYNSPPPP 343


>At1g07520.1 68414.m00805 scarecrow transcription factor family
           protein similar to GB:AAD24412 from [Arabidopsis
           thaliana] (Plant J. 18 (1), 111-119 (1999)); contains
           Pfam profile: PF03514 GRAS family transcription factor
          Length = 695

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
 Frame = -2

Query: 420 SKKKMLYNILKYSSLILPSINLMTLLDRRPNRAEVPPNSLRPYRVLIVIHFHPIHSVDFV 241
           SKK+    ILK  S+ L +   MTL+    N+  +  ++ +   VL ++ F  ++   + 
Sbjct: 384 SKKRTAAQILKSYSVFLSASPFMTLIYFFSNKMIL--DAAKDASVLHIVDFGILYGFQWP 441

Query: 240 LIVY*ILLNKPGECIPRI--IYVINHGQRP 157
           + +  +  + PG    RI  I +  HG RP
Sbjct: 442 MFIQHLSKSNPGLRKLRITGIEIPQHGLRP 471


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,701,637
Number of Sequences: 28952
Number of extensions: 280034
Number of successful extensions: 563
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)