Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0802
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.2  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   4.2  
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    22   4.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.7  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   9.7  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 646 SWIVQFEGPQEITRVLELFSNSE 578
           SW+  F+G   ITR +  +  S+
Sbjct: 915 SWVAPFDGNSPITRYMIEYKQSK 937


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 282 PWYQPSFTEVRKVLQLFRLRQINNG 356
           P  QP+    R   +  R++Q+NNG
Sbjct: 80  PQQQPASVARRNARERNRVKQVNNG 104


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 484 LSLANPRLYTNSRTLF 437
           LS A PRL  N+RT+F
Sbjct: 87  LSSAFPRLKRNARTIF 102


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 15  KTVRSCLLYQSQCSSIVRGERLFALG 92
           K V  C L +S   + + G R  ALG
Sbjct: 496 KVVAECTLKESAAINQILGRRWHALG 521


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 15  KTVRSCLLYQSQCSSIVRGERLFALG 92
           K V  C L +S   + + G R  ALG
Sbjct: 388 KVVAECTLKESAAINQILGRRWHALG 413


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 232 WQLLRSRGAKLAFVIRIRGINQVSPKSVKFCNCLD 336
           W LL + G  ++ V R     ++SP  +    CLD
Sbjct: 37  WILLFTLGVTISGVYRTDFYKKLSPMRLIVQTCLD 71


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,409
Number of Sequences: 336
Number of extensions: 4088
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)