Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0802
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 100 2e-22
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 98 9e-22
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 97 2e-21
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 29 0.64
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 29 0.64
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 1.1
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom... 28 1.5
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2... 27 2.6
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 3.4
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T... 27 3.4
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 27 3.4
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 4.5
SPBC21C3.04c |||mitochondrial ribosomal protein subunit L34|Schi... 26 4.5
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 6.0
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 25 7.9
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 100 bits (239), Expect = 2e-22
Identities = 45/72 (62%), Positives = 57/72 (79%)
Frame = +3
Query: 306 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 485
++RKVL+L RL +INN VFVR NKA MLRI EPY+ +G PNL SVREL+YKRGF K++
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKIN 163
Query: 486 GQRIPITSTALL 521
GQRI ++ AL+
Sbjct: 164 GQRIALSDNALI 175
Score = 58.0 bits (134), Expect = 1e-09
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +2
Query: 509 NSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGG-WRKKTIHYVDG 685
N+++E+ L K+++I +ED+IHEI+ VG FK + FLWPF L KK H+ +G
Sbjct: 172 NALIEEALGKYDVISIEDIIHEIYNVGSHFKEVTKFLWPFTLTPVKHSLMEKKVKHFNEG 231
Query: 686 GDFG 697
G
Sbjct: 232 RKAG 235
Score = 56.8 bits (131), Expect = 3e-09
Identities = 25/72 (34%), Positives = 42/72 (58%)
Frame = +2
Query: 41 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 220
PE +LK ++ + ++ + K ++E FKRAE ++ YR +ER+ IRL R
Sbjct: 15 PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRS 74
Query: 221 ARNRGNYYVPGE 256
A+N+G+ +VP E
Sbjct: 75 AKNKGDIFVPDE 86
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 98.3 bits (234), Expect = 9e-22
Identities = 42/72 (58%), Positives = 58/72 (80%)
Frame = +3
Query: 306 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 485
+ RK++QL RL QINNGVFV+ NKAT ML++ EPY+ +G PNLK+VREL+YKRGF K++
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVN 165
Query: 486 GQRIPITSTALL 521
QRI ++ A++
Sbjct: 166 KQRIALSDNAII 177
Score = 89.0 bits (211), Expect = 6e-19
Identities = 36/64 (56%), Positives = 52/64 (81%), Gaps = 1/64 (1%)
Frame = +2
Query: 509 NSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWR-KKTIHYVDG 685
N+I+E L K++I+ +EDLIHEI+TVG FK A+NF+WPF+L++P GGWR +K H+++G
Sbjct: 174 NAIIEAALGKYSILSIEDLIHEIYTVGPNFKQAANFIWPFQLSSPLGGWRDRKFKHFIEG 233
Query: 686 GDFG 697
GD G
Sbjct: 234 GDAG 237
Score = 60.9 bits (141), Expect = 2e-10
Identities = 32/79 (40%), Positives = 44/79 (55%)
Frame = +2
Query: 20 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 199
SK+ PES+LK + +++++ KK+ I KRAE Y EYR ER+
Sbjct: 10 SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69
Query: 200 EIRLARQARNRGNYYVPGE 256
+I L R+AR GNYYVP E
Sbjct: 70 QIELGRKARAEGNYYVPDE 88
Score = 33.1 bits (72), Expect = 0.039
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +1
Query: 259 KLAFVIRIRGINQVSPKSVKFCNCL 333
KL FVIRIRGIN + PK+ K L
Sbjct: 90 KLVFVIRIRGINNIPPKARKIMQLL 114
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 97.1 bits (231), Expect = 2e-21
Identities = 40/72 (55%), Positives = 57/72 (79%)
Frame = +3
Query: 306 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 485
+ RK++QL RL QINNG+FV+ NKA ML++ EPY+ +G PN K+VREL+YKRGF K++
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVN 164
Query: 486 GQRIPITSTALL 521
QRIP++ A++
Sbjct: 165 KQRIPLSDNAII 176
Score = 91.9 bits (218), Expect = 8e-20
Identities = 39/64 (60%), Positives = 52/64 (81%), Gaps = 1/64 (1%)
Frame = +2
Query: 509 NSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWR-KKTIHYVDG 685
N+I+E L K++I+ VEDLIHEI+TVG FK A+NFLWPFKL++P GGWR +K H+++G
Sbjct: 173 NAIIEAALGKYSILSVEDLIHEIYTVGPNFKQAANFLWPFKLSSPLGGWRERKFKHFIEG 232
Query: 686 GDFG 697
GD G
Sbjct: 233 GDAG 236
Score = 64.1 bits (149), Expect = 2e-11
Identities = 32/73 (43%), Positives = 43/73 (58%)
Frame = +2
Query: 41 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 220
PES+LK + +++S+ KK+ I KRAE Y EYR ER++I LAR+
Sbjct: 16 PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75
Query: 221 ARNRGNYYVPGEP 259
AR GNY+VP EP
Sbjct: 76 ARAEGNYFVPHEP 88
Score = 32.3 bits (70), Expect = 0.069
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 259 KLAFVIRIRGINQVSPKSVKFCNCL 333
KL FV+RIRGIN + PK+ K L
Sbjct: 89 KLIFVVRIRGINNIPPKARKIMQLL 113
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 29.1 bits (62), Expect = 0.64
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 660 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 526
LR P L L+GH + L +SP + SST +C+W L
Sbjct: 311 LRNPYQRLHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDL 355
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 29.1 bits (62), Expect = 0.64
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = +2
Query: 122 SAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGN 238
+++K+ REI ++ E+ +R+K ++ ++ + A N GN
Sbjct: 151 TSLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = +2
Query: 104 TLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEPNWHLSSES 283
TL + + I + ++ + ++ Y +KERD R Q + P PN L++
Sbjct: 601 TLIKANETIDQLTKMLEEVSDQLR-YSLKERDFFRSLVQENEKLLDMAPATPNSKLNTNL 659
Query: 284 VVSTKFHRS 310
+ T + RS
Sbjct: 660 IEQTSYQRS 668
>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 188
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -2
Query: 673 MNGLLAPTTSWIVQFEGPQEITRVLELFSNSE 578
MNGL P W + GP + R++ F E
Sbjct: 75 MNGLPGPYVKWFLNSVGPDGLYRMVSAFDTKE 106
>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = -2
Query: 640 IVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFMEPL---LNNAVEVIGIRCPLSLAN 470
++ F I L LFS +D+M+ LN + + L L + +++G R PLSL +
Sbjct: 75 LLNFTQKNPILASLFLFSTDKDIMNSSLNPASQAYTFDLGRTLPISEDILGYRKPLSLTD 134
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 26.6 bits (56), Expect = 3.4
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = -2
Query: 640 IVQFEGPQEITRVLE-LFSNSEDLMDEVLNTDNVVFMEPLLNNAVEVIGIRCPLSLANPR 464
IV+ +E+ ++ LFSN+ +L E + F++ L+ + E I C L L+NPR
Sbjct: 1137 IVREYSSREVVMAVDMLFSNTRNLGSEGIYD----FVKALIEVSWEEI--ECSLELSNPR 1190
Query: 463 LYTNSRTLFKLGY 425
L++ + L ++ Y
Sbjct: 1191 LFSLQK-LVEISY 1202
>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 26.6 bits (56), Expect = 3.4
Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 1/115 (0%)
Frame = -2
Query: 694 KVSPVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFMEPLLNN 515
KVS +++G L+ ++I Q + + + +FS + D+ + + T N +F N
Sbjct: 127 KVSRKTMISGALSRALAYINQVQNKNTLRSRILIFSLTGDVALQYIPTMNCIFCAQKKNI 186
Query: 514 AVEVIGIRCPLSLANPRLYTNSRTLFKLGYPQAM*GSAIRSIFTVALFRR-TNTP 353
+ V I K+ P+ + + S+F R+ NTP
Sbjct: 187 PINVCNIEGGTLFLEQAADATGGIYLKVDNPKGLLQYLMMSLFPDQNLRKHLNTP 241
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 387 NMLRIAEPYI--AWGYPNLKSVRELVYKRGFAKLSGQRIPITSTAL 518
N +I+ PY GYP +K + L YK KLS +PI +T +
Sbjct: 35 NSTKISPPYSENVEGYPKVKIEKSLPYKYDNCKLS-ICVPIVTTCI 79
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +2
Query: 155 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 256
+A Q ++ + +RL N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342
>SPBC21C3.04c |||mitochondrial ribosomal protein subunit
L34|Schizosaccharomyces pombe|chr 2|||Manual
Length = 108
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 446 P*VSIQTWIRQAEWTTYTNHFNSIVEKRLHKHNII 550
P ++I ++Q W TY N + KR KH +
Sbjct: 49 PTMNIFGQMQQVRWKTYGNEYQPSNRKRKRKHGFL 83
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 586 NSEDLMDEVLNTDNVVFMEPLLNNAVEVIGIRCPLSLANPRLYTNSRTL 440
+SE+ + V+N+ V L + + G CP+S A P L R+L
Sbjct: 218 SSEEEEENVINSSKSVPSFDLHDPFSQTFGKECPISTAPPVLNIGDRSL 266
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +3
Query: 3 ARGRKTVRSCLLYQSQCSSIVRGERLFALGDYRLR*RGVLLPSRRRGKSSRGLNSTSR 176
+RG+ ++C L+Q+ C R R + + G+ LP + K G S R
Sbjct: 18 SRGQPRCQTCTLFQADCHYSNRARRKRLVQRSKETFGGITLPVKNIEKPEDGEESVQR 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,820
Number of Sequences: 5004
Number of extensions: 65491
Number of successful extensions: 201
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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