Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0802
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 111 7e-25
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 111 7e-25
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 71 9e-13
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374... 30 2.0
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 29 4.7
03_03_0149 + 14843880-14844145,14846501-14846561,14846608-148467... 28 8.2
01_06_0457 - 29524544-29525962,29526518-29526606,29526841-295268... 28 8.2
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 111 bits (266), Expect = 7e-25
Identities = 48/75 (64%), Positives = 63/75 (84%)
Frame = +3
Query: 306 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 485
+ RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKSVREL+YKRG+ KL+
Sbjct: 101 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLN 160
Query: 486 GQRIPITSTALLRRG 530
QRIP+ + ++ G
Sbjct: 161 KQRIPLQNNKVIEEG 175
Score = 95.9 bits (228), Expect = 3e-20
Identities = 40/63 (63%), Positives = 49/63 (77%)
Frame = +2
Query: 509 NSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGG 688
N ++E+ L KH+IIC+EDL+HEI TVG FK A+NFLWPFKL P GG +KK HYV+GG
Sbjct: 169 NKVIEEGLGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGG 228
Query: 689 DFG 697
D G
Sbjct: 229 DAG 231
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/77 (35%), Positives = 43/77 (55%)
Frame = +2
Query: 26 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 205
K VPESVLK + L + A++ ++ IF RA+QY +EY +E++ +
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66
Query: 206 RLARQARNRGNYYVPGE 256
+L R+AR +G +YV E
Sbjct: 67 QLKREARMKGGFYVSPE 83
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 256 AKLAFVIRIRGINQVSPKSVKFCNCL 333
AKL FV+RIRGIN + PK+ K L
Sbjct: 84 AKLLFVVRIRGINAMHPKTRKILQLL 109
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 111 bits (266), Expect = 7e-25
Identities = 48/72 (66%), Positives = 63/72 (87%)
Frame = +3
Query: 306 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 485
+ RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKSVREL+YKRG+ KL+
Sbjct: 100 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLN 159
Query: 486 GQRIPITSTALL 521
QRIP+T+ ++
Sbjct: 160 KQRIPLTNNKVI 171
Score = 89.4 bits (212), Expect = 2e-18
Identities = 38/56 (67%), Positives = 44/56 (78%)
Frame = +2
Query: 530 LHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFG 697
L KH+IIC+EDL+HEI TVG FK A+NFLWPFKL P GG +KK HYV+GGD G
Sbjct: 181 LGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAG 236
Score = 52.8 bits (121), Expect = 3e-07
Identities = 24/73 (32%), Positives = 42/73 (57%)
Frame = +2
Query: 38 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 217
VPESVL+ + + + +I+ ++ IF RA+QY +EY +E++ ++L R
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69
Query: 218 QARNRGNYYVPGE 256
+AR +G +YV E
Sbjct: 70 EARMKGGFYVSPE 82
Score = 31.1 bits (67), Expect = 0.88
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 259 KLAFVIRIRGINQVSPKSVKFCNCL 333
KL FV+RIRGIN + PK+ K L
Sbjct: 84 KLLFVVRIRGINAMHPKTRKILQLL 108
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 70.9 bits (166), Expect = 9e-13
Identities = 29/73 (39%), Positives = 50/73 (68%)
Frame = +3
Query: 309 VRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSG 488
+R++L+ RL Q+ GVF++ AT+ L + EP+I +G+PNLK+V++L+YK+G L
Sbjct: 104 MRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDK 163
Query: 489 QRIPITSTALLRR 527
+ P+TS L+ +
Sbjct: 164 EPFPLTSNDLIEK 176
Score = 63.3 bits (147), Expect = 2e-10
Identities = 29/61 (47%), Positives = 40/61 (65%)
Frame = +2
Query: 509 NSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGG 688
N ++EK L ++ IIC+EDL+HEI +VG F+ ASNFL PFKL P + K + DG
Sbjct: 171 NDLIEKALGEYGIICLEDLVHEIASVGPHFREASNFLMPFKLKCPERRLQMKKKPFKDGA 230
Query: 689 D 691
+
Sbjct: 231 E 231
>10_06_0101 +
10736987-10737100,10737263-10737301,10737397-10737474,
10737539-10737685,10737781-10737888,10738115-10738449,
10738572-10739544,10739702-10739980
Length = 690
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 104 TLKRRSSAIKKKREIF--KRAEQYVKE-YRIKERDEIRLARQARNRGNYY 244
TL+ R+ IK KRE+F KR E ++E ++ + E+ + A NR +
Sbjct: 149 TLETRTDPIKLKREVFRRKRKEHRIQELLQVDKEAELHMRNVATNRSRNF 198
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 503 HFNSIVEKRLHKHNIICVEDLIHEI 577
H I K LH+H I VEDL+H +
Sbjct: 102 HTPCINHKHLHRHYSIGVEDLVHHV 126
>03_03_0149 +
14843880-14844145,14846501-14846561,14846608-14846720,
14848448-14848540,14849578-14849793,14853773-14856023
Length = 999
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 458 IQTWIRQAEWTTYTNHFNSIVEKRLHKHNIICVEDLIHEI 577
+QT EWT + +S KRL +C +DL HE+
Sbjct: 490 VQTKEFPHEWTEVFKYLSSKKSKRLDNLLSLCFDDLPHEL 529
>01_06_0457 -
29524544-29525962,29526518-29526606,29526841-29526892,
29527573-29527677,29528181-29528208,29528279-29528343,
29528808-29528880,29528932-29529113
Length = 670
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 410 LHCLGIPQLKECP*VSIQTWIRQAEW 487
LHC G+PQ+K +W+R +E+
Sbjct: 109 LHCSGLPQIKLLSRFRRSSWVRTSEY 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,859,229
Number of Sequences: 37544
Number of extensions: 418952
Number of successful extensions: 1011
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -