Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0802
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32) 116 2e-26
SB_47597| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_34699| Best HMM Match : Peptidase_S8 (HMM E-Value=1.5e-07) 30 2.1
SB_6573| Best HMM Match : FtsX (HMM E-Value=0.27) 30 2.1
SB_43038| Best HMM Match : AAA (HMM E-Value=0.84) 29 4.8
SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6) 29 4.8
SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29) 28 8.4
SB_34887| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.95) 28 8.4
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37) 28 8.4
SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0) 28 8.4
SB_39708| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
Length = 245
Score = 116 bits (279), Expect = 2e-26
Identities = 51/74 (68%), Positives = 64/74 (86%)
Frame = +3
Query: 306 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 485
+VRK+LQL RLRQINNGVFVRLNKAT NMLRI +PYIA+GYPNLKSVREL+YKRG+ K+
Sbjct: 101 KVRKILQLLRLRQINNGVFVRLNKATANMLRIVQPYIAFGYPNLKSVRELIYKRGYGKVD 160
Query: 486 GQRIPITSTALLRR 527
QR+ +T +++ +
Sbjct: 161 KQRVALTDNSIVEK 174
Score = 111 bits (268), Expect = 4e-25
Identities = 50/63 (79%), Positives = 55/63 (87%)
Frame = +2
Query: 509 NSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGG 688
NSIVEK L KH IICVEDLIHEIFTVGE FK ASNFLWPFKL++P GG+RKKT H+V+GG
Sbjct: 169 NSIVEKVLGKHGIICVEDLIHEIFTVGEHFKEASNFLWPFKLSSPKGGFRKKTTHFVEGG 228
Query: 689 DFG 697
D G
Sbjct: 229 DHG 231
Score = 73.7 bits (173), Expect = 1e-13
Identities = 35/81 (43%), Positives = 50/81 (61%)
Frame = +2
Query: 14 EDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKE 193
+D K+P VPE++LK + L ++ K++EIFKRAE+YVKEYR KE
Sbjct: 3 QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62
Query: 194 RDEIRLARQARNRGNYYVPGE 256
DE+R+ + A+ GN+YVP E
Sbjct: 63 VDELRMKKMAKKHGNFYVPPE 83
Score = 35.5 bits (78), Expect = 0.042
Identities = 18/26 (69%), Positives = 19/26 (73%)
Frame = +1
Query: 256 AKLAFVIRIRGINQVSPKSVKFCNCL 333
A+LAFVIRIRGIN VSPK K L
Sbjct: 84 ARLAFVIRIRGINGVSPKVRKILQLL 109
>SB_47597| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = -2
Query: 571 MDEVLNTDNVVFMEPLLNNAVEVIGIRCPLSLANPRLYTNSRTL 440
+D LN +VF E +LN+AV ++ LSL P+ Y NS +L
Sbjct: 124 VDPTLNM--LVFGESILNDAVSIVMTNTILSLGGPK-YANSSSL 164
>SB_34699| Best HMM Match : Peptidase_S8 (HMM E-Value=1.5e-07)
Length = 785
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 592 FSNSEDLMDEVLNTDNVVFMEPLLNNAVEVIGIRCP 485
FS DLM+E++N V+F+ NN + + CP
Sbjct: 314 FSRVVDLMNELVNEHGVIFISSAGNNGPALSTVGCP 349
>SB_6573| Best HMM Match : FtsX (HMM E-Value=0.27)
Length = 275
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = -2
Query: 571 MDEVLNTDNVVFMEPLLNNAVEVIGIRCPLSLANPRLYTNSRTL 440
+D LN +VF E +LN+AV ++ LSL P+ Y NS +L
Sbjct: 25 VDPTLNM--LVFGESILNDAVSIVMTNTILSLGGPK-YANSSSL 65
>SB_43038| Best HMM Match : AAA (HMM E-Value=0.84)
Length = 957
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +3
Query: 288 YQPSFTEVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVY 461
YQ T + + L + IN G +N++ VN+ R A + YP++KSVR +Y
Sbjct: 231 YQNGTTFFYEQVNLHKTVVINKGTDSIINES-VNLPRRARDSEKFVYPDIKSVRVTIY 287
>SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)
Length = 528
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 545 IICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKT 667
+ C+ + E+ TV E F+ NFL FK+ P KKT
Sbjct: 344 LTCLCGDLSEMITVEEAFQMCENFLEKFKIFFPLDAPNKKT 384
>SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 116 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 241
R AI ++RE+++R E Y + + R+ R R R Y
Sbjct: 16 RRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 57
>SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 116 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 241
R + ++REI++R E Y + + R+ RL R R Y
Sbjct: 27 RRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMY 68
>SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)
Length = 482
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = +2
Query: 8 RKEDSKKLP--AVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEY 181
+KE SK + AV +S+LK + T ++ AI KKR + +Y++
Sbjct: 307 KKESSKHIEKNAVKKSILKAPKRNAKKAATDAEQTTTKK--AIDKKRRRYNSRRRYIRRR 364
Query: 182 RIKERDEIRLARQARNR 232
R R R R R
Sbjct: 365 RFTSRRRATRRRYTRRR 381
>SB_34887| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.95)
Length = 439
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 122 SAIKKKREIFKRAEQYVKEY--RIKERDEIRLARQARNRGNYYVPGEPNW 265
+ + +++ +++ K+Y ++ + D ++LAR RNRG P E W
Sbjct: 106 NTVSLPKQLDANLKEFFKKYPRKVLQNDGLKLARHLRNRGR---PTETTW 152
>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
Length = 712
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 188 KERDEIRLARQARNRGNYYVP 250
K RD +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503
>SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 475
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 630 LKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSLFS 520
LKGH K L+++P V + + +S +CLW + S
Sbjct: 239 LKGHTKEGYGLSWNPNVNGNLLSASDDHTICLWDISS 275
>SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)
Length = 816
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 485 WTTYTNHFNSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFL 619
WT T+ S ++K +K N +C+ L+ + +K+ S L
Sbjct: 742 WTKRTHQLLSALKKEFNKKNTVCLNSLVQKNTRKQAAYKFYSCLL 786
>SB_39708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 566 IHEIFTVGEKFKYASNFLWPFKLNN 640
++ + T KF YA++ LW F NN
Sbjct: 58 LNRVITTTGKFSYATDDLWQFSCNN 82
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,926,562
Number of Sequences: 59808
Number of extensions: 489010
Number of successful extensions: 1238
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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