Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0802
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   109   2e-24
Z81131-4|CAD01083.1|  415|Caenorhabditis elegans Hypothetical pr...    31   0.60 
AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    31   0.79 
AL132862-14|CAB60548.1|  541|Caenorhabditis elegans Hypothetical...    30   1.8  
Z69794-2|CAA93681.1|  786|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      28   5.6  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    28   5.6  
AF025450-2|AAB70936.3|  350|Caenorhabditis elegans Hypothetical ...    28   7.4  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  109 bits (261), Expect = 2e-24
 Identities = 45/72 (62%), Positives = 60/72 (83%)
 Frame = +3

Query: 312 RKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQ 491
           RK LQ+ RLRQINNGVFV+LNKAT+ +LRI EPY+AWGYPN K++ +L+YKRG+AK+ G 
Sbjct: 102 RKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGN 161

Query: 492 RIPITSTALLRR 527
           R+PIT   ++ +
Sbjct: 162 RVPITDNTIVEQ 173



 Score =  108 bits (260), Expect = 3e-24
 Identities = 47/63 (74%), Positives = 53/63 (84%)
 Frame = +2

Query: 509 NSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGG 688
           N+IVE+ L K NIIC+EDL HEI TVG  FK A+NFLWPFKLNNPTGGW KKT H+V+GG
Sbjct: 168 NTIVEQSLGKFNIICLEDLAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEGG 227

Query: 689 DFG 697
           DFG
Sbjct: 228 DFG 230



 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 31/79 (39%), Positives = 48/79 (60%)
 Frame = +2

Query: 20  SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 199
           +KK+P VPE+VLK             Q  +   +   +KK + FKRAE+YV+EYR  +++
Sbjct: 4   TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKE 63

Query: 200 EIRLARQARNRGNYYVPGE 256
            +RL R+A  +G++YVP E
Sbjct: 64  GLRLKREAEAKGDFYVPAE 82



 Score = 32.7 bits (71), Expect = 0.26
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +1

Query: 259 KLAFVIRIRGINQVSPKSVK 318
           K+AFV+RIRGINQ+ PK  K
Sbjct: 84  KVAFVVRIRGINQLHPKPRK 103


>Z81131-4|CAD01083.1|  415|Caenorhabditis elegans Hypothetical
           protein T24D1.5 protein.
          Length = 415

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +2

Query: 128 IKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEPNWHLSSES 283
           ++++R  F+R EQ +++Y +  R + +  RQ       +  G  NW L S++
Sbjct: 20  VEEQRRAFRRYEQQMEDYELARRIQEQENRQNEGERPDFPNGGGNWDLDSDN 71


>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 428 VSPSNVRLGDT*HIHSSLIQTYKHTIVYLAQSKQLQNFTDFGE 300
           ++PS  RL    H H+ L Q +++ I    Q K++Q F   GE
Sbjct: 496 LAPSGTRLSTVRHTHTLLFQIWQYKINSFCQIKKIQFFVVCGE 538


>AL132862-14|CAB60548.1|  541|Caenorhabditis elegans Hypothetical
           protein Y73F8A.20 protein.
          Length = 541

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/84 (23%), Positives = 37/84 (44%)
 Frame = +2

Query: 101 VTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEPNWHLSSE 280
           +T KRR++ I +K+ + ++  +   E + KE+D  R  +      N     + N   SS 
Sbjct: 438 ITKKRRNTKITRKQRLLRKVRK--SEEKEKEKDRKRAKKALIKNSNLKKKRKSNSSSSSN 495

Query: 281 SVVSTKFHRSP*SSATV*TAPNKQ 352
               T   +S  +S  V   P ++
Sbjct: 496 GTTETSSTKSSSTSTKVVDVPKEK 519


>Z69794-2|CAA93681.1|  786|Caenorhabditis elegans Hypothetical
           protein R03G8.4 protein.
          Length = 786

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 464 TWIRQAEWTTYTNHFNSIVEKRLHKHNIICVED 562
           ++IR  E    T HFN  +   LH H+   VED
Sbjct: 417 SFIRMLEKIVGTEHFNEAIRTYLHTHDFSNVED 449


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
            C05C12.3 protein.
          Length = 1694

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 282  PWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 374
            PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1360 PWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 282  PWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 374
            PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1360 PWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1681

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 282  PWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 374
            PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1347 PWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1377


>AF025450-2|AAB70936.3|  350|Caenorhabditis elegans Hypothetical
           protein C41H7.5 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +2

Query: 134 KKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYV-PGEPNWHLSSESVVSTKFHRS 310
           K+ E  +  E+Y  E     +DE     Q +NR NY +  G P+ + S+ SV S K  RS
Sbjct: 217 KQEENHENHEEYHVEEVSYAQDENVYEHQQQNRQNYPMHGGSPSSNYSTISVDSVKRRRS 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,849,410
Number of Sequences: 27780
Number of extensions: 366261
Number of successful extensions: 1046
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)