Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0802
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 105 3e-23
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 105 3e-23
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 105 3e-23
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 104 5e-23
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 104 5e-23
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 102 3e-22
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 59 2e-09
At2g26690.1 68415.m03201 nitrate transporter (NTP2) identical to... 36 0.026
At3g29400.1 68416.m03694 exocyst subunit EXO70 family protein si... 33 0.14
At3g52860.1 68416.m05825 expressed protein 30 1.7
At4g38240.2 68417.m05401 alpha-1,3-mannosyl-glycoprotein beta-1,... 29 2.2
At4g38240.1 68417.m05400 alpha-1,3-mannosyl-glycoprotein beta-1,... 29 2.2
At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochro... 29 2.2
At5g62360.1 68418.m07827 invertase/pectin methylesterase inhibit... 29 3.0
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 29 3.0
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 29 3.0
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 29 3.0
At3g07770.1 68416.m00947 heat shock protein-related strong simil... 29 3.9
At5g53210.1 68418.m06614 basic helix-loop-helix (bHLH) family pr... 28 5.2
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 28 5.2
At5g13990.1 68418.m01636 exocyst subunit EXO70 family protein co... 28 6.8
At4g13780.1 68417.m02137 methionine--tRNA ligase, putative / met... 28 6.8
At1g16060.2 68414.m01927 ovule development protein, putative sim... 28 6.8
At1g16060.1 68414.m01926 ovule development protein, putative sim... 28 6.8
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 27 9.0
At5g06740.1 68418.m00762 lectin protein kinase family protein co... 27 9.0
At3g59970.3 68416.m06695 methylenetetrahydrofolate reductase 1 (... 27 9.0
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 105 bits (252), Expect = 3e-23
Identities = 45/75 (60%), Positives = 62/75 (82%)
Frame = +3
Query: 306 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 485
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLN 159
Query: 486 GQRIPITSTALLRRG 530
QR +T +++ +G
Sbjct: 160 HQRTALTDNSIVDQG 174
Score = 96.3 bits (229), Expect = 2e-20
Identities = 43/63 (68%), Positives = 49/63 (77%)
Frame = +2
Query: 509 NSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGG 688
NSIV++ L KH IICVEDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GG
Sbjct: 168 NSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGG 227
Query: 689 DFG 697
D G
Sbjct: 228 DAG 230
Score = 54.0 bits (124), Expect = 9e-08
Identities = 29/80 (36%), Positives = 44/80 (55%)
Frame = +2
Query: 17 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 196
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 197 DEIRLARQARNRGNYYVPGE 256
+ I+L R+A+ +G +YV E
Sbjct: 63 ELIQLKREAKLKGGFYVDPE 82
Score = 34.3 bits (75), Expect = 0.079
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 256 AKLAFVIRIRGINQVSPKSVKFCNCL 333
AKL F+IRIRGIN + PK+ K L
Sbjct: 83 AKLLFIIRIRGINAIDPKTKKILQLL 108
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 105 bits (252), Expect = 3e-23
Identities = 45/75 (60%), Positives = 62/75 (82%)
Frame = +3
Query: 306 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 485
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLN 159
Query: 486 GQRIPITSTALLRRG 530
QR +T +++ +G
Sbjct: 160 HQRTALTDNSIVDQG 174
Score = 96.3 bits (229), Expect = 2e-20
Identities = 43/63 (68%), Positives = 49/63 (77%)
Frame = +2
Query: 509 NSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGG 688
NSIV++ L KH IICVEDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GG
Sbjct: 168 NSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGG 227
Query: 689 DFG 697
D G
Sbjct: 228 DAG 230
Score = 54.0 bits (124), Expect = 9e-08
Identities = 29/80 (36%), Positives = 44/80 (55%)
Frame = +2
Query: 17 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 196
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 197 DEIRLARQARNRGNYYVPGE 256
+ I+L R+A+ +G +YV E
Sbjct: 63 ELIQLKREAKLKGGFYVDPE 82
Score = 34.3 bits (75), Expect = 0.079
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 256 AKLAFVIRIRGINQVSPKSVKFCNCL 333
AKL F+IRIRGIN + PK+ K L
Sbjct: 83 AKLLFIIRIRGINAIDPKTKKILQLL 108
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 105 bits (252), Expect = 3e-23
Identities = 45/75 (60%), Positives = 62/75 (82%)
Frame = +3
Query: 306 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 485
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLN 159
Query: 486 GQRIPITSTALLRRG 530
QR +T +++ +G
Sbjct: 160 HQRTALTDNSIVDQG 174
Score = 96.3 bits (229), Expect = 2e-20
Identities = 43/63 (68%), Positives = 49/63 (77%)
Frame = +2
Query: 509 NSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGG 688
NSIV++ L KH IICVEDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GG
Sbjct: 168 NSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGG 227
Query: 689 DFG 697
D G
Sbjct: 228 DAG 230
Score = 54.0 bits (124), Expect = 9e-08
Identities = 29/80 (36%), Positives = 44/80 (55%)
Frame = +2
Query: 17 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 196
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 197 DEIRLARQARNRGNYYVPGE 256
+ I+L R+A+ +G +YV E
Sbjct: 63 ELIQLKREAKLKGGFYVDPE 82
Score = 34.3 bits (75), Expect = 0.079
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 256 AKLAFVIRIRGINQVSPKSVKFCNCL 333
AKL F+IRIRGIN + PK+ K L
Sbjct: 83 AKLLFIIRIRGINAIDPKTKKILQLL 108
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 104 bits (250), Expect = 5e-23
Identities = 45/72 (62%), Positives = 61/72 (84%)
Frame = +3
Query: 306 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 485
+ +K+LQL RLRQI NGVF+++NKATVNMLR EPY+ +GYPNLKSV+EL+YKRG+ KL+
Sbjct: 103 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLN 162
Query: 486 GQRIPITSTALL 521
QRI +T +++
Sbjct: 163 HQRIALTDNSIV 174
Score = 96.3 bits (229), Expect = 2e-20
Identities = 43/63 (68%), Positives = 49/63 (77%)
Frame = +2
Query: 509 NSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGG 688
NSIV++ L KH IICVEDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GG
Sbjct: 171 NSIVDQALGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGG 230
Query: 689 DFG 697
D G
Sbjct: 231 DAG 233
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/73 (38%), Positives = 41/73 (56%)
Frame = +2
Query: 38 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 217
VPESVLK + + +++ ++ IFKRAEQY KEY K+ + IRL R
Sbjct: 13 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 72
Query: 218 QARNRGNYYVPGE 256
+A+ +G +YV E
Sbjct: 73 EAKLKGGFYVDPE 85
Score = 34.3 bits (75), Expect = 0.079
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 256 AKLAFVIRIRGINQVSPKSVKFCNCL 333
AKL F+IRIRGIN + PK+ K L
Sbjct: 86 AKLLFIIRIRGINAIDPKTKKILQLL 111
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 104 bits (250), Expect = 5e-23
Identities = 45/72 (62%), Positives = 61/72 (84%)
Frame = +3
Query: 306 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 485
+ +K+LQL RLRQI NGVF+++NKATVNMLR EPY+ +GYPNLKSV+EL+YKRG+ KL+
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLN 157
Query: 486 GQRIPITSTALL 521
QRI +T +++
Sbjct: 158 HQRIALTDNSIV 169
Score = 96.3 bits (229), Expect = 2e-20
Identities = 43/63 (68%), Positives = 49/63 (77%)
Frame = +2
Query: 509 NSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGG 688
NSIV++ L KH IICVEDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GG
Sbjct: 166 NSIVDQALGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGG 225
Query: 689 DFG 697
D G
Sbjct: 226 DAG 228
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/73 (38%), Positives = 41/73 (56%)
Frame = +2
Query: 38 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 217
VPESVLK + + +++ ++ IFKRAEQY KEY K+ + IRL R
Sbjct: 8 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 67
Query: 218 QARNRGNYYVPGE 256
+A+ +G +YV E
Sbjct: 68 EAKLKGGFYVDPE 80
Score = 34.3 bits (75), Expect = 0.079
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 256 AKLAFVIRIRGINQVSPKSVKFCNCL 333
AKL F+IRIRGIN + PK+ K L
Sbjct: 81 AKLLFIIRIRGINAIDPKTKKILQLL 106
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 102 bits (244), Expect = 3e-22
Identities = 43/74 (58%), Positives = 62/74 (83%)
Frame = +3
Query: 306 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 485
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +G+PNLKSV+EL+YKRG+ KL+
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLN 157
Query: 486 GQRIPITSTALLRR 527
QRI +T +++ +
Sbjct: 158 HQRIALTDNSIVEQ 171
Score = 95.9 bits (228), Expect = 2e-20
Identities = 43/63 (68%), Positives = 48/63 (76%)
Frame = +2
Query: 509 NSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGG 688
NSIVE+ L KH IIC EDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GG
Sbjct: 166 NSIVEQALGKHGIICTEDLIHEILTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGG 225
Query: 689 DFG 697
D G
Sbjct: 226 DAG 228
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/73 (39%), Positives = 39/73 (53%)
Frame = +2
Query: 38 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 217
VPESVLK Q + + ++ IFKRAEQY KEY KE++ I L R
Sbjct: 8 VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKR 67
Query: 218 QARNRGNYYVPGE 256
+A+ +G +YV E
Sbjct: 68 EAKLKGGFYVDPE 80
Score = 34.3 bits (75), Expect = 0.079
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 256 AKLAFVIRIRGINQVSPKSVKFCNCL 333
AKL F+IRIRGIN + PK+ K L
Sbjct: 81 AKLLFIIRIRGINAIDPKTKKILQLL 106
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 59.3 bits (137), Expect = 2e-09
Identities = 22/74 (29%), Positives = 44/74 (59%)
Frame = +3
Query: 306 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 485
+ +++L +L+ + GVF + + L +PY+ +GYPN KSV++L+YK+G +
Sbjct: 102 KTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIE 161
Query: 486 GQRIPITSTALLRR 527
G +P+T ++ +
Sbjct: 162 GNPVPLTDNNIIEQ 175
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Frame = +2
Query: 509 NSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGG--WRKKTIHYVD 682
N+I+E+ L +H I+ +EDL++EI VG+ F+ FL P KLN P RKK + + +
Sbjct: 170 NNIIEQALGEHKILGIEDLVNEIARVGDHFREVMRFLGPLKLNKPVADVLHRKKQV-FSE 228
Query: 683 GGDFG 697
GGD G
Sbjct: 229 GGDTG 233
Score = 37.1 bits (82), Expect = 0.011
Identities = 23/72 (31%), Positives = 34/72 (47%)
Frame = +2
Query: 11 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 190
+E++K L +PE VLK + S KKK KR E +V E+R K
Sbjct: 3 EEEAKGLDYIPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVHEFRAK 62
Query: 191 ERDEIRLARQAR 226
E D IR+ ++ +
Sbjct: 63 EVDMIRMKQRVK 74
>At2g26690.1 68415.m03201 nitrate transporter (NTP2) identical to
nitrate transporter (ntp2) [Arabidopsis thaliana]
GI:4490321
Length = 577
Score = 35.9 bits (79), Expect = 0.026
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +3
Query: 216 DKHAIVATTTFPGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQI 347
DK AIVA F + G+ PNPW S T+V +V + RL I
Sbjct: 292 DKAAIVAEGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPI 335
>At3g29400.1 68416.m03694 exocyst subunit EXO70 family protein
similar to EXO70 protein (GI:2352998) [Mus musculus];
contains Pfam domain PF03081: Exo70 exocyst complex
subunit
Length = 658
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 467 WIRQAEWTTYTNHFNSIVEKRLHKHNIICVEDLIHEIFTVGEK 595
W+ QA WT Y+ H NS+ E+ + K+ +E L+ ++F K
Sbjct: 609 WVIQAYWTFYSRHKNSVSERYI-KYTTDDIERLLLDLFAGSSK 650
>At3g52860.1 68416.m05825 expressed protein
Length = 156
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 95 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 205
++ LK + IKK +F+ +++ VKE K RDE+
Sbjct: 117 MEEELKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153
>At4g38240.2 68417.m05401 alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase, putative
similar to N-acetylglucosaminyltransferase I from
Arabidopsis thaliana [gi:5139335]; contains AT-AC
non-consensus splice sites at intron 13
Length = 444
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 599 KYASNFLWPFKLNNPTGGWRKKTIHYVDGGDF 694
++ S +L P KLN+ T W+ K + Y+ G++
Sbjct: 321 QFFSQYLEPIKLNDVTVDWKAKDLGYLTEGNY 352
>At4g38240.1 68417.m05400 alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase, putative
similar to N-acetylglucosaminyltransferase I from
Arabidopsis thaliana [gi:5139335]; contains AT-AC
non-consensus splice sites at intron 13
Length = 444
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 599 KYASNFLWPFKLNNPTGGWRKKTIHYVDGGDF 694
++ S +L P KLN+ T W+ K + Y+ G++
Sbjct: 321 QFFSQYLEPIKLNDVTVDWKAKDLGYLTEGNY 352
>At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400);
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]
Length = 837
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3
Query: 660 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 526
LR P + L + GH K ++Y+ F + + + SST L LW L
Sbjct: 690 LRNPKIPLCTMIGHSKTVSYVKFVDSSTL--VSSSTDNTLKLWDL 732
>At5g62360.1 68418.m07827 invertase/pectin methylesterase inhibitor
family protein similar to pectinesterase from Arabidosis
thaliana SP|Q42534, Lycopersicon esculentum SP|Q43143;
contains Pfam profile PF04043: Plant invertase/pectin
methylesterase inhibitor
Length = 203
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -1
Query: 386 HSSLIQTYKHTIVYLAQSKQLQNFTDFGETWLIPRIRMTNANLAPRERSSCHDCV 222
H+SLIQT + + A + L + + +R++N+ L P+E S+ DCV
Sbjct: 64 HASLIQTSPKLMAHAALNITLAS----AKVTSAMMVRLSNSRLKPKEVSAMRDCV 114
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3
Query: 660 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 526
LR P + L + GH K ++Y+ F + + + SST L LW L
Sbjct: 648 LRNPKLPLCTMIGHHKTVSYVRFVDSSTL--VSSSTDNTLKLWDL 690
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3
Query: 660 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 526
LR P + L + GH K ++Y+ F + + + SST L LW L
Sbjct: 648 LRNPKLPLCTMIGHHKTVSYVRFVDSSTL--VSSSTDNTLKLWDL 690
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 191 ERDEIRLARQARNRGNYYVPGEPNWHLSSESVVSTKFHRS 310
ER + AR+ G+Y++P LS E VST RS
Sbjct: 336 ERQALNEAREGEKNGHYHMPETRGLCLSEEQTVSTVRKRS 375
>At3g07770.1 68416.m00947 heat shock protein-related strong
similarity to heat-shock protein [Secale cereale]
GI:556673; contains Pfam profiles PF02518: ATPase,
histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein, PF00183: Hsp90 protein
Length = 803
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = -2
Query: 634 QFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFMEPLLNNAVEVIGIRCPLSLANPRL 461
+FE E++R+++L NS L ++ VF+ L++NA + + LS+ NP L
Sbjct: 96 KFEYQAEVSRLMDLIVNS-------LYSNKEVFLRELISNASDALDKLRYLSVTNPEL 146
>At5g53210.1 68418.m06614 basic helix-loop-helix (bHLH) family
protein contains similarity to helix-loop-helix
DNA-binding protein
Length = 294
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -2
Query: 607 RVLELFSNSEDLMDEVLNTDNVVFMEPLLNNAVEVIGIRCPLS 479
+V+++ + EDL E+L + E +LN+ IGI C LS
Sbjct: 239 QVMKIIAALEDLALEILQVNINTVDETMLNSFTIKIGIECQLS 281
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 WD-40
repeats (PF00400) (2 weak)
Length = 1108
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 630 LKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 526
LKGH+K + L FS + I + S +C WS+
Sbjct: 900 LKGHQKRITGLAFSTALNI-LVSSGADAQICFWSI 933
>At5g13990.1 68418.m01636 exocyst subunit EXO70 family protein
contains Pfam domain PF03081: Exo70 exocyst complex
subunit;
Length = 695
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -2
Query: 655 PTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVV-FMEPLLNNA 512
P T W ++ P+E++ +LE LM +LNT + + E L+N+A
Sbjct: 136 PKTVW---YQDPEEVSSLLEAVDRVSKLMGLLLNTKSCLDHHESLINHA 181
>At4g13780.1 68417.m02137 methionine--tRNA ligase, putative /
methionyl-tRNA synthetase, putative / MetRS, putative
similar to methionyl-tRNA synthetase [Oryza sativa]
GI:4091008; contains Pfam profiles PF00133: tRNA
synthetases class I (I, L, M and V), PF01588: Putative
tRNA binding domain
Length = 797
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +2
Query: 140 REIFKRAEQYVKEY-----RIKERDEIRLARQARNRGNYYVPGEPNWHLSSE 280
+ + ++ E++V EY ++K + ++ A + GNYY+ W L E
Sbjct: 441 KSLAEKVEKFVAEYVEAMEKVKLKQGLKTAMLISSEGNYYLQASQFWKLYKE 492
>At1g16060.2 68414.m01927 ovule development protein, putative
similar to ovule development protein AINTEGUMENTA
(GI:1209099)[Arabidopsis thaliana]
Length = 275
Score = 27.9 bits (59), Expect = 6.8
Identities = 24/75 (32%), Positives = 35/75 (46%)
Frame = -2
Query: 688 SPVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFMEPLLNNAV 509
+P+D N LL S + F P + + + S+SED D ++ PL+ A
Sbjct: 160 NPIDTANNLLESPHSDLSPFIKPNHESDLSQSQSSSEDNDD---RKTKLLKSSPLV--AE 214
Query: 508 EVIGIRCPLSLANPR 464
EVIG P +A PR
Sbjct: 215 EVIGPSTPPEIAPPR 229
>At1g16060.1 68414.m01926 ovule development protein, putative
similar to ovule development protein AINTEGUMENTA
(GI:1209099)[Arabidopsis thaliana]
Length = 345
Score = 27.9 bits (59), Expect = 6.8
Identities = 24/75 (32%), Positives = 35/75 (46%)
Frame = -2
Query: 688 SPVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFMEPLLNNAV 509
+P+D N LL S + F P + + + S+SED D ++ PL+ A
Sbjct: 230 NPIDTANNLLESPHSDLSPFIKPNHESDLSQSQSSSEDNDD---RKTKLLKSSPLV--AE 284
Query: 508 EVIGIRCPLSLANPR 464
EVIG P +A PR
Sbjct: 285 EVIGPSTPPEIAPPR 299
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -2
Query: 661 LAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFMEPLLNNAVEVIG 497
LA W+ G ++LEL N+E L+D+VL + + M + + ++G
Sbjct: 1125 LAYNLGWLSHPGGSAIAAQLLELGKNNEILIDQVLRQELALAMPKIYSILARLLG 1179
>At5g06740.1 68418.m00762 lectin protein kinase family protein
contains Legume lectins beta-chain signature,
PROSITE:PS00307 and Serine/Threonine protein kinases
active-site signature, PROSITE:PS00108
Length = 652
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 261 IGICHPNPWYQPSFTEVRKVL 323
+ CHPNP +PS V KVL
Sbjct: 586 LACCHPNPNQRPSMKTVLKVL 606
>At3g59970.3 68416.m06695 methylenetetrahydrofolate reductase 1
(MTHFR1) identical to methylenetetrahydrofolate
reductase MTHFR1 [Arabidopsis thaliana] GI:5911425
Length = 592
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 261 IGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN-KATVNMLRIAEPYIAWGYP 431
IG +PW + + + +L +IN+ F+ +N + +VN + P I WG P
Sbjct: 403 IGNLKSSPWSELDGLQPETKIINEQLGKINSNGFLTINSQPSVNAAKSDSPAIGWGGP 460
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,981,072
Number of Sequences: 28952
Number of extensions: 340888
Number of successful extensions: 970
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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