Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0801
         (686 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    52   3e-09
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    22   4.1  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   7.2  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   7.2  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 52.4 bits (120), Expect = 3e-09
 Identities = 25/55 (45%), Positives = 33/55 (60%)
 Frame = +3

Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEE 419
           + T VAARGLDI  V  ++ YD P    EY+HR+GRT R +G  G A  F   ++
Sbjct: 464 VATGVAARGLDIKDVQHVINYDLPKSIDEYVHRIGRTGR-VGNKGKATSFFDEDQ 517


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -1

Query: 143 WWYLTDIQVEKNTITFFFLFFLRNVNKTIIRFSDGH 36
           +++L    +  + +T FF F  + + + I+RF   H
Sbjct: 55  YYWLNVCCLNLSIVTIFFNFATKKLEQFIVRFMKYH 90


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 472 SNSFRVTLDCFKYRKNPSSSGRKNNKACPLV 380
           S S  V+++   +  +PSSS   N  +CP V
Sbjct: 146 SMSVNVSMNMTMHGYHPSSSYPANEISCPQV 176


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 199 VVVFHVWTSQE 167
           V+  HVWTS+E
Sbjct: 288 VIPIHVWTSKE 298


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,997
Number of Sequences: 336
Number of extensions: 3889
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)