Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0801
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 142 6e-35
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 88 1e-18
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 81 1e-16
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 66 3e-12
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 66 3e-12
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 63 3e-11
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 61 2e-10
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 60 3e-10
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 59 5e-10
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 58 9e-10
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 58 1e-09
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 58 1e-09
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 58 2e-09
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 57 3e-09
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 57 3e-09
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 56 4e-09
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 56 5e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 54 1e-08
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 51 1e-07
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 50 4e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 49 7e-07
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 49 7e-07
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 45 1e-05
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 36 0.004
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 35 0.010
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 31 0.12
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 29 0.63
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc... 27 3.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 4.4
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 26 4.4
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc... 25 7.8
SPAC513.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.8
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 142 bits (343), Expect = 6e-35
Identities = 63/83 (75%), Positives = 74/83 (89%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
LCT+VAARGLDIPAVDWIVQYDPPDDP++YIHRVGRTARG +G +L+FL P ELGFLR
Sbjct: 391 LCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGKSLMFLAPSELGFLR 450
Query: 435 YLKQSRVTLNEFEFSWNKVADIQ 503
YLK ++V+LNEFEF NKVA++Q
Sbjct: 451 YLKTAKVSLNEFEFPANKVANVQ 473
Score = 101 bits (243), Expect = 7e-23
Identities = 47/85 (55%), Positives = 59/85 (69%)
Frame = +1
Query: 1 ATVDSLEQGYIVCPSEKRMMVLFTFLKKNRKKKVMVFFSTCMSVKYHHELFNYIDLPVMS 180
+TV+ LEQGY+V S+KR ++LF+FLK+N KKKV+VF S+C SVKY EL NYIDLPV+
Sbjct: 306 STVEGLEQGYVVVDSDKRFLLLFSFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLD 365
Query: 181 IHGXXXXXXXXXXXXXXCNAESGIL 255
+HG CNAE GIL
Sbjct: 366 LHGKQKQQRRTNTFFEFCNAEKGIL 390
Score = 50.0 bits (114), Expect = 3e-07
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = +2
Query: 509 LEKLISRNYFLNQSAKEAFKSYLRAYDSHHLKKRF 613
LEKL+S+NY+L QSAK+ ++SYL+AY S+ LK F
Sbjct: 476 LEKLVSKNYYLQQSAKDGYRSYLQAYASYSLKSIF 510
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 87.8 bits (208), Expect = 1e-18
Identities = 42/88 (47%), Positives = 54/88 (61%)
Frame = +3
Query: 258 CTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLRY 437
CTD+ ARGLD PAVDW++Q D P+D YIHRVGRTAR SG+ALL L P E FL+
Sbjct: 341 CTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTAR-YNRSGNALLLLLPSEEAFLKR 399
Query: 438 LKQSRVTLNEFEFSWNKVADIQLH*KNL 521
L+ ++ + K I+ +NL
Sbjct: 400 LESKKIAVERINVKDGKKTSIRNQLQNL 427
Score = 43.2 bits (97), Expect = 4e-05
Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Frame = +1
Query: 1 ATVDSLEQGYIVCPSEKRMMVLFTFLKKNRKKKVMVFFSTCMSVKYHHELFNYI--DLPV 174
+T +L Q Y+ P +++ +LF F++ + K K +VF S+C V++ +E F + + +
Sbjct: 253 STPSNLNQFYLTVPLTEKLDILFGFIRTHLKFKTIVFLSSCKQVRFVYETFRRMRPGISL 312
Query: 175 MSIHG 189
+ +HG
Sbjct: 313 LHLHG 317
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 81.0 bits (191), Expect = 1e-16
Identities = 40/73 (54%), Positives = 52/73 (71%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
LCTDVAARGLD+P VD +VQYD P +Y+HR+GRTAR G +G A++FL P+E ++
Sbjct: 501 LCTDVAARGLDLPNVDLVVQYDAPFSTDDYLHRIGRTARA-GHNGAAIMFLLPKESEYIN 559
Query: 435 YLKQSRVTLNEFE 473
LK S V+ N E
Sbjct: 560 LLKSS-VSANILE 571
Score = 34.3 bits (75), Expect = 0.017
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +1
Query: 10 DSLEQGYIVCPSEKRMMVLFTFLKKNRK--KKVMVFFSTCMSVKYHHELF 153
+ L Q Y+V P + R++ L L+ + + KK+++F S SV +H E F
Sbjct: 383 EQLLQRYVVVPPKLRLVSLVALLRSHVRSYKKIIIFLSCSDSVDFHFEAF 432
Score = 32.7 bits (71), Expect = 0.051
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 509 LEKLISRNYFLNQSAKEAFKSYLRAYDSHHLKKRFLTLLQSL*L-RASKSIWVSNVP 676
LE+ I N + AK AF SY+RAY +H +R + ++ L L +KS + P
Sbjct: 605 LERFILENEPMRNIAKRAFTSYVRAYATHLSSERSIFNMRDLHLGHIAKSFALREAP 661
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 66.5 bits (155), Expect = 3e-12
Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEEL-GFL 431
+ TDVAARGLDIP VD ++ YD P D K YIHRVGRTAR G +G ++ + +L FL
Sbjct: 340 VATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARA-GRAGKSIALVTQYDLEPFL 398
Query: 432 RYLKQSRVTLNEFE 473
R + E+E
Sbjct: 399 RIEATIGKKMQEYE 412
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 66.5 bits (155), Expect = 3e-12
Identities = 35/83 (42%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
+ TDVA+RGLDIP+V ++ +D P DP +YIHRVGRTAR G SG ++ + ++ +
Sbjct: 313 VATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARA-GRSGESISIVTERDVDLVH 371
Query: 435 YLKQSRVT-LNEFE-FSWNKVAD 497
++ T L+E+E S NK+ +
Sbjct: 372 AIEDRVGTKLSEYEHVSENKMLE 394
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 63.3 bits (147), Expect = 3e-11
Identities = 29/57 (50%), Positives = 40/57 (70%)
Frame = +3
Query: 261 TDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFL 431
TDVA+RG+DIP + ++ YD P PK ++HRVGRTAR G +G A +R E+ G+L
Sbjct: 403 TDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARA-GRTGWAYSLVRAEDAGYL 458
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 60.9 bits (141), Expect = 2e-10
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Frame = +3
Query: 261 TDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFL---RPEELGFL 431
TD+A+RGLDIP VD+++Q DPP DPK + HR GR R G +G A++ L R EE L
Sbjct: 316 TDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRA-GRAGVAIVLLNDGREEEYEEL 374
Query: 432 RYLKQSRVT 458
+++ +T
Sbjct: 375 LRVRKVPIT 383
Score = 36.3 bits (80), Expect = 0.004
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +1
Query: 4 TVDSLEQGYIVCPSEKRMMVLFTFLKKNRKKKVMVFFSTCMSVKYHHELFNYIDLP--VM 177
T SL +V P ++ + L +K +VFFS+C SV+Y + LF LP ++
Sbjct: 227 TPSSLAIQSLVIPPIYKVQCMIHLLCTIEYEKAIVFFSSCASVEYFNSLFLTYKLPFEIV 286
Query: 178 SIHG 189
++HG
Sbjct: 287 ALHG 290
Score = 29.9 bits (64), Expect = 0.36
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 500 TTTLEKLISRNYFLNQSAKEAFKSYLRAYDSHH 598
T L K++S++ L AF S++RAY HH
Sbjct: 401 THELRKIVSKDRDLYDKGLRAFVSHVRAYTKHH 433
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 60.1 bits (139), Expect = 3e-10
Identities = 29/62 (46%), Positives = 39/62 (62%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
+CTDVAARG+DIP+V ++ Y P Y+HR GRTAR G ++L P+EL L+
Sbjct: 444 VCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARA-NEDGVSILMCGPKELSQLK 502
Query: 435 YL 440
L
Sbjct: 503 RL 504
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 59.3 bits (137), Expect = 5e-10
Identities = 26/64 (40%), Positives = 42/64 (65%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
+CTD+ ARG+D+ V ++ YD P + + YIHR+GR+ R G G A+ F+ E++ LR
Sbjct: 315 ICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGR-FGRKGVAINFVTNEDVRILR 373
Query: 435 YLKQ 446
++Q
Sbjct: 374 DIEQ 377
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 58.4 bits (135), Expect = 9e-10
Identities = 27/55 (49%), Positives = 34/55 (61%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEE 419
+ TDV RG+DI V+ ++ YD PD P Y+HRVGR R GT G A+ F EE
Sbjct: 350 VATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGR-FGTKGLAITFSSSEE 403
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 58.0 bits (134), Expect = 1e-09
Identities = 28/61 (45%), Positives = 37/61 (60%)
Frame = +3
Query: 261 TDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLRYL 440
TDV ARG+D P + +VQ P + +YIHR+GRT R G +G A L L +E FL +
Sbjct: 350 TDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRA-GKTGEAYLILLEQEKPFLNSI 408
Query: 441 K 443
K
Sbjct: 409 K 409
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 58.0 bits (134), Expect = 1e-09
Identities = 27/62 (43%), Positives = 37/62 (59%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
+ T VA+RGLDIP V ++ YD P D +Y+HR+GRT R G +G A+ F G +
Sbjct: 485 VATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRA-GNTGQAVAFFNRNNKGIAK 543
Query: 435 YL 440
L
Sbjct: 544 EL 545
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 57.6 bits (133), Expect = 2e-09
Identities = 25/55 (45%), Positives = 38/55 (69%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEE 419
+ T V ARGLD+ ++ +V YD P+ ++Y+HRVGRT R G +G A+ F+ PE+
Sbjct: 723 IATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRA-GHTGVAVTFITPEQ 776
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 56.8 bits (131), Expect = 3e-09
Identities = 24/66 (36%), Positives = 38/66 (57%)
Frame = +3
Query: 243 IWYTLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEEL 422
IW + TD+ ARG+D V ++ +D P YIHR+GRT R G +G A+ F E+
Sbjct: 339 IWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRA-GNTGQAVTFFTKEDG 397
Query: 423 GFLRYL 440
+++ +
Sbjct: 398 EYIKLI 403
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 56.8 bits (131), Expect = 3e-09
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEE-LGFL 431
+C+D+ ARG+D+ ++ YDPP + Y+HR+GRTAR G G A ++ E F
Sbjct: 492 VCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARA-GREGFAWTLVQSHEGHHFS 550
Query: 432 RYLKQSRVTL 461
+ +KQ R TL
Sbjct: 551 KLVKQLRRTL 560
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 56.4 bits (130), Expect = 4e-09
Identities = 25/50 (50%), Positives = 35/50 (70%)
Frame = +3
Query: 249 YTLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHAL 398
Y L TDVA+RG+DI ++ ++ Y+ P + Y+HRVGRTAR G SG A+
Sbjct: 557 YLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARA-GRSGRAI 605
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 56.0 bits (129), Expect = 5e-09
Identities = 25/55 (45%), Positives = 36/55 (65%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEE 419
+ TD+A RG+DIP V ++ Y+ ++Y HR+GRT R G SG A+ FL PE+
Sbjct: 571 VATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRA-GKSGTAITFLGPED 624
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 54.4 bits (125), Expect = 1e-08
Identities = 25/55 (45%), Positives = 35/55 (63%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEE 419
+ TDVAARGLDIP V ++ P ++Y+HR+GRT R T G A+ F P++
Sbjct: 471 VATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRA-NTKGTAITFFTPQD 524
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 51.2 bits (117), Expect = 1e-07
Identities = 22/64 (34%), Positives = 40/64 (62%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
+ TD+ ARG+D+ V ++ YD P + + YIHR+GR R G G ++ F+ +++ +R
Sbjct: 313 ITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGR-FGRKGVSINFVTNDDVRMMR 371
Query: 435 YLKQ 446
++Q
Sbjct: 372 EIEQ 375
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 49.6 bits (113), Expect = 4e-07
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLF 404
+ TDVA+RG+D+ + + YD P + ++Y+HR+GRT R G G A +
Sbjct: 424 VATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRA-GAKGTAYTY 472
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 48.8 bits (111), Expect = 7e-07
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = +3
Query: 273 ARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPE-ELG 425
ARGLD V ++ +D P + K YIHR+GRTAR G G A+ F+ P+ E+G
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARA-GKPGTAMSFVVPKSEVG 437
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 48.8 bits (111), Expect = 7e-07
Identities = 20/51 (39%), Positives = 35/51 (68%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFL 407
+C+D+ RG+DI AV+ ++ +D P + + Y+HR+GR+ R G G A+ F+
Sbjct: 336 VCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR-FGHRGLAISFI 385
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 44.8 bits (101), Expect = 1e-05
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Frame = +3
Query: 261 TDVAARGLDIPAVDWIVQYDPP------DDPKEYIHRVGRTARGLGTSGHALLFLRPEE 419
T+V ARG+D+ V+ +V YD P DP+ Y+HR+GRT R G G ++ F+ ++
Sbjct: 409 TNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGR-FGRVGVSINFVHDKK 466
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 36.3 bits (80), Expect = 0.004
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTAR 371
+ T + GLDI VD I+ YD P + R+GRT R
Sbjct: 497 IATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTGR 535
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 35.1 bits (77), Expect = 0.010
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTAR 371
+ T + GLDI D I+ YD P I R+GRT R
Sbjct: 536 VATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGR 574
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 31.5 bits (68), Expect = 0.12
Identities = 17/56 (30%), Positives = 32/56 (57%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEEL 422
+ T VA G+D+P+ + +++++ +Y+ GR AR + + L+FL EEL
Sbjct: 428 IATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGR-ARAMASK--FLIFLNTEEL 480
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 29.1 bits (62), Expect = 0.63
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -2
Query: 478 ENSNSFRVTLDCFKYRKNPSSS---GRKNNKACPLVPRPLAVLPTRWMYSFGSS 326
++SNSF V + S S R+NN A P+ R +V +Y GSS
Sbjct: 456 DSSNSFSVHRSSTNHSSTNSGSPNLSRRNNLAIPIASRRKSVSAVNTLYGVGSS 509
>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 240
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/55 (23%), Positives = 30/55 (54%)
Frame = +1
Query: 268 SRRVVWTFRPLIGLYSMILQMIQRNTSIGLEELRGV*ELVDTLCYSYVQKSLDSY 432
S V + ++PL LY +++ +Q N ++ L + ++V ++C S ++ + Y
Sbjct: 51 SDNVRFVYQPLDELYIVLITNLQSNILQDIDTLHLLSQVVTSICSSLEEREILEY 105
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 399 LFLRPEELGFLRYLKQSRVTLNEFEFSWNKVAD 497
+F P+ELG L L V + + + W+K D
Sbjct: 1339 VFYSPKELGGLGMLSMGHVLIPQSDLRWSKQTD 1371
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 604 FQVMRIIGSQVTFEGFFCRLIQEIVXRDKFF*CSCISATL 485
FQ +I S F+ + L +E++ RDK + C C A +
Sbjct: 326 FQPYKITYSSDYFDKLY-ELAEELIKRDKAYVCHCTDAEI 364
>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Frame = +2
Query: 488 SCRYTTTLEKLISRNYFLNQSAKEAFKSYLRAYDS-------HHLKKRF 613
SC T KLI + Q KE+F + R D +HLKK F
Sbjct: 382 SCPLLTGYGKLILAEFLYKQEPKESFGRFSRFLDQTVPRRMFYHLKKDF 430
>SPAC513.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 100
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +2
Query: 98 RLWYSFQPVCLSNTTMNFS-----IILTFL*CPYMENNNKRSVQQHSSS 229
R+W S +CL T +N I+L L ++NN KR ++ + S
Sbjct: 12 RIWSSLNIICLMVTFLNVQLSKTPIVLMPLFIALLKNNRKRETKKQTIS 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,965,721
Number of Sequences: 5004
Number of extensions: 62908
Number of successful extensions: 214
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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