Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0801
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 122 4e-28
SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27) 79 4e-15
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 68 8e-12
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 62 3e-10
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 9e-09
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 1e-08
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 6e-08
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 6e-08
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 54 1e-07
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 53 2e-07
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 8e-07
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 50 1e-06
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 50 2e-06
SB_21307| Best HMM Match : Helicase_C (HMM E-Value=1.7e-11) 48 9e-06
SB_4445| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 9e-06
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 48 9e-06
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 46 3e-05
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 46 4e-05
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 44 9e-05
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 44 9e-05
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 44 2e-04
SB_36976| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_58021| Best HMM Match : Helicase_C (HMM E-Value=0.017) 38 0.008
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_24297| Best HMM Match : Helicase_C (HMM E-Value=0.017) 38 0.008
SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 37 0.013
SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 37 0.013
SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20) 37 0.013
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 36 0.023
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 36 0.023
SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21) 33 0.29
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 32 0.38
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 32 0.50
SB_52432| Best HMM Match : NDUF_B7 (HMM E-Value=0.47) 30 2.0
SB_50071| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 29 2.7
SB_43464| Best HMM Match : Ribosomal_L17 (HMM E-Value=0.0093) 28 6.2
SB_43421| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_41067| Best HMM Match : Ribosomal_L17 (HMM E-Value=1.7e-05) 28 6.2
SB_58248| Best HMM Match : Pox_A32 (HMM E-Value=0.97) 28 8.1
SB_37811| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 122 bits (293), Expect = 4e-28
Identities = 55/67 (82%), Positives = 58/67 (86%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
LCTDVAARGLDIP VDWIVQYDP DDPKEYIHRVGRTARG GHALLFL PEEL FLR
Sbjct: 873 LCTDVAARGLDIPEVDWIVQYDPADDPKEYIHRVGRTARGTEGKGHALLFLLPEELAFLR 932
Query: 435 YLKQSRV 455
YLK +++
Sbjct: 933 YLKHAKL 939
Score = 120 bits (289), Expect = 1e-27
Identities = 57/85 (67%), Positives = 63/85 (74%)
Frame = +1
Query: 1 ATVDSLEQGYIVCPSEKRMMVLFTFLKKNRKKKVMVFFSTCMSVKYHHELFNYIDLPVMS 180
+TV+ LEQGYIV PSEKR +VLFTFLKKNR KKVMVFFS+C SVKYH EL NYIDLPV+
Sbjct: 788 STVEGLEQGYIVVPSEKRFLVLFTFLKKNRSKKVMVFFSSCNSVKYHSELLNYIDLPVLE 847
Query: 181 IHGXXXXXXXXXXXXXXCNAESGIL 255
IHG CNA+SGIL
Sbjct: 848 IHGKQKQQKRTTTFFEFCNAKSGIL 872
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/35 (54%), Positives = 29/35 (82%)
Frame = +2
Query: 509 LEKLISRNYFLNQSAKEAFKSYLRAYDSHHLKKRF 613
LE+LI +NY+L++SAK+A+K+Y++AY SH K F
Sbjct: 939 LERLIEKNYYLHKSAKDAYKAYIQAYASHQHKSIF 973
>SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27)
Length = 331
Score = 78.6 bits (185), Expect = 4e-15
Identities = 34/74 (45%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
+CTDV ARG+DIP V+W++QYDPP ++HR GRTAR +G G+A++FL P E ++
Sbjct: 145 VCTDVMARGVDIPEVNWVIQYDPPSSANAFVHRCGRTAR-IGNEGNAVVFLLPTEDSYVD 203
Query: 435 YLK-QSRVTLNEFE 473
++ +V L E
Sbjct: 204 FISINQKVPLQALE 217
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +1
Query: 4 TVDSLEQGYIVCPSEKRMMVLFTFLKKNRKKKVMVFFSTCMSVKYHHE-LFNYI-DLPVM 177
T +L+ Y++C S ++ L FLK + KK MVFFSTC V Y + L ++ ++ +M
Sbjct: 60 TPSTLQNFYLICRSHEKFSQLVAFLKARKDKKNMVFFSTCACVNYFSKALTKFLPNVHIM 119
Query: 178 SIHG 189
++HG
Sbjct: 120 ALHG 123
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 67.7 bits (158), Expect = 8e-12
Identities = 31/60 (51%), Positives = 41/60 (68%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
+ TDVAARGLDIP +D +VQ +PP D YIHR GRT R G G ++F +P++ G L+
Sbjct: 359 VATDVAARGLDIPEIDLVVQCEPPKDVDAYIHRSGRTGRA-GREGICIVFYKPQQEGLLQ 417
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 62.5 bits (145), Expect = 3e-10
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
+ TDVA+RGLDIP V+ +V + P DPK+YIHRVGRTAR G G A+ + ++ ++
Sbjct: 302 VATDVASRGLDIPQVELVVNSNIPADPKDYIHRVGRTARA-GRGGMAISMVTQYDIDRVK 360
Query: 435 YLKQS-RVTLNEFEFSWNKV 491
+++ L E+ S +V
Sbjct: 361 KIEEKINTKLTEYTTSEKEV 380
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/60 (46%), Positives = 39/60 (65%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
L TDVAARGLDI ++ ++ Y P DP+ Y+HR GRTAR G +++ + PE+L R
Sbjct: 511 LATDVAARGLDIANIEHVIHYQVPKDPEVYVHRSGRTARA-SHEGLSVVLVGPEDLAHYR 569
>SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 57.6 bits (133), Expect = 9e-09
Identities = 26/55 (47%), Positives = 38/55 (69%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEE 419
+ TDVA+RGLDI + +++ YD P ++Y+HRVGRT R G SG +L F+ E+
Sbjct: 97 IATDVASRGLDIKDITYVINYDFPRHIEDYVHRVGRTGRA-GRSGTSLTFISRED 150
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/64 (40%), Positives = 43/64 (67%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
+ TDV ARGLD+ V ++ YD P++ + YIHR+GR+ R G G A+ F++ +++ LR
Sbjct: 291 ISTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGR-FGRKGVAINFVKSDDIRILR 349
Query: 435 YLKQ 446
++Q
Sbjct: 350 DIEQ 353
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 54.8 bits (126), Expect = 6e-08
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLF 404
+ T VAARGLDIP V ++ +D P D +EY+HR+GRT R +G +G A F
Sbjct: 1155 VATAVAARGLDIPNVKHVINFDLPTDIEEYVHRIGRTGR-VGHTGLATSF 1203
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 54.8 bits (126), Expect = 6e-08
Identities = 25/50 (50%), Positives = 33/50 (66%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLF 404
+ T+VAARGLDI V ++ +D P D EY+HR+GRT R +G G A F
Sbjct: 1017 IATNVAARGLDIDDVKHVINFDLPSDIDEYVHRIGRTGR-IGNKGKATTF 1065
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/51 (52%), Positives = 33/51 (64%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFL 407
+ TDVA+RGLD P V ++ YD PD + YIHR GRT R +G G A FL
Sbjct: 387 VATDVASRGLDFPEVTHVINYDLPDTIECYIHRCGRTGR-IGHHGIATSFL 436
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/64 (42%), Positives = 37/64 (57%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
+ TDVA RG+DI V ++ YD ++Y HR+GRT R G +G A+ FL + G
Sbjct: 339 VATDVAGRGIDIKDVSHVINYDMAKTIEDYTHRIGRTGRA-GKTGIAVSFLTQSDSGVFY 397
Query: 435 YLKQ 446
LKQ
Sbjct: 398 DLKQ 401
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 51.2 bits (117), Expect = 8e-07
Identities = 26/56 (46%), Positives = 35/56 (62%)
Frame = +3
Query: 261 TDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGF 428
TDVAARG+DIP +D ++ + P K ++HRVGR AR G SG A + +E F
Sbjct: 532 TDVAARGIDIPMLDNVINFHFPPKAKLFVHRVGRVARA-GRSGTAYSLVANDETIF 586
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = +1
Query: 22 QGYIVCPSEKRMMVLFTFLKKNRKKKVMVFFSTCMSVKYHHELFNYID--LPVMSIHGXX 195
Q Y+VC ++ LF+F++ + K K++VF S+C VK+ +E F + +P+M+++G
Sbjct: 250 QSYVVCELPDKLNFLFSFIRNHLKSKILVFVSSCKQVKFIYEGFRRLQPGIPLMALYGKQ 309
Query: 196 XXXXXXXXXXXXCNAESGILF 258
C +LF
Sbjct: 310 KQLKRVAIYDEFCKKTQCVLF 330
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/39 (51%), Positives = 28/39 (71%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTAR 371
+CTD+A+RGLD V ++ +D P+ +YIHRVGRT R
Sbjct: 751 VCTDIASRGLDTSDVSHVINFDFPNSMVDYIHRVGRTGR 789
>SB_21307| Best HMM Match : Helicase_C (HMM E-Value=1.7e-11)
Length = 87
Score = 47.6 bits (108), Expect = 9e-06
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPE 416
+ T++ RG+DI V+ + YD P+D Y+HRV R R GT G A+ F+ E
Sbjct: 17 VATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR-FGTKGLAITFVSDE 69
>SB_4445| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 47.6 bits (108), Expect = 9e-06
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Frame = +3
Query: 252 TLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFL 431
T+ A+RGLDIP V ++Q D D + +HRVGRTAR G+ G + F+ ++ +
Sbjct: 102 TIKDGFASRGLDIPNVTHVIQLDFATDAAQMLHRVGRTARA-GSHGKVVNFITKDDEELV 160
Query: 432 RYLKQSRVTLNE--FE--FSWNKVADIQLH*KNLS 524
L+ NE +E FS N++ +L +NL+
Sbjct: 161 NALRACDNNSNEKTYENIFSRNRMFRRRLLARNLT 195
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 47.6 bits (108), Expect = 9e-06
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPE 416
+ T++ RG+DI V+ + YD P+D Y+HRV R R GT G A+ F+ E
Sbjct: 390 VATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR-FGTKGLAITFVSDE 442
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 243 IWYTLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGH 392
IW + T++ RG+D V+ ++ YD P YIHR+G T GH
Sbjct: 434 IWVLIATELMGRGIDFKGVNLVINYDFPTSAVAYIHRIGLVTVACTTKGH 483
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/51 (39%), Positives = 32/51 (62%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFL 407
+ TD+ ARG+D V+ +V D P + + Y+HR+GR R GT G A+ ++
Sbjct: 269 ISTDLTARGIDAENVNLVVNMDVPHNGETYLHRIGRAGR-FGTEGMAVTYV 318
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 44.4 bits (100), Expect = 9e-05
Identities = 15/39 (38%), Positives = 29/39 (74%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTAR 371
+C+D+ RG+DI +V+ ++ +D P + + Y+HR+GR+ R
Sbjct: 346 VCSDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGR 384
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 44.4 bits (100), Expect = 9e-05
Identities = 15/39 (38%), Positives = 29/39 (74%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTAR 371
+C+D+ RG+DI +V+ ++ +D P + + Y+HR+GR+ R
Sbjct: 346 VCSDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGR 384
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 6/57 (10%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDP------KEYIHRVGRTARGLGTSGHALLFL 407
+ T+V+ARG+D+ V ++ YD P D + Y+HR+GRT R G SG A+ F+
Sbjct: 399 ITTNVSARGIDVEQVTLVINYDMPMDMQGKADFETYLHRIGRTGR-FGKSGIAVNFI 454
>SB_36976| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +3
Query: 279 GLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEEL 422
G+DIP VD I+ Y P + + Y+ +GR R G HA L+ +P L
Sbjct: 2 GVDIPDVDHIIHYGIPSEVEHYVQEIGRGGRD-GRLCHATLYYKPYHL 48
>SB_58021| Best HMM Match : Helicase_C (HMM E-Value=0.017)
Length = 91
Score = 37.9 bits (84), Expect = 0.008
Identities = 13/32 (40%), Positives = 24/32 (75%)
Frame = +3
Query: 276 RGLDIPAVDWIVQYDPPDDPKEYIHRVGRTAR 371
RG+DI +V+ ++ +D P + + Y+HR+GR+ R
Sbjct: 5 RGIDIQSVNVVINFDFPKNSETYLHRIGRSGR 36
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 37.9 bits (84), Expect = 0.008
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHR 353
+ TD+ ARG+D+ V ++ YD P + + YIHR
Sbjct: 385 ITTDLLARGIDVHQVSLVINYDLPSNRENYIHR 417
>SB_24297| Best HMM Match : Helicase_C (HMM E-Value=0.017)
Length = 91
Score = 37.9 bits (84), Expect = 0.008
Identities = 13/32 (40%), Positives = 24/32 (75%)
Frame = +3
Query: 276 RGLDIPAVDWIVQYDPPDDPKEYIHRVGRTAR 371
RG+DI +V+ ++ +D P + + Y+HR+GR+ R
Sbjct: 5 RGIDIQSVNVVINFDFPKNSETYLHRIGRSGR 36
>SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 445
Score = 37.1 bits (82), Expect = 0.013
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGR 362
+ TDVA++GLD P + ++ +D P+D + Y+ G+
Sbjct: 142 VATDVASKGLDFPDIQHVINFDMPEDIENYVLLCGQ 177
>SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 212
Score = 37.1 bits (82), Expect = 0.013
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGR 362
+ TDVA++GLD P + ++ +D P+D + Y+ G+
Sbjct: 142 VATDVASKGLDFPDIQHVINFDMPEDIENYVLLCGQ 177
>SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20)
Length = 556
Score = 37.1 bits (82), Expect = 0.013
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEEL 422
+ T G+DIP VD I+ + P + + Y+ +GR R G +A L+ +P L
Sbjct: 316 VATCALGMGVDIPDVDHIIHFGIPSEVEHYVQEIGRGGRD-GRLCYATLYYKPYHL 370
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 36.3 bits (80), Expect = 0.023
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +3
Query: 294 AVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELG-FLRYLKQ 446
AV ++ +D P +EY+H++GR R LG +G ++ F+ G FL+ + +
Sbjct: 396 AVSKVINFDMPPTYEEYVHQIGRAGR-LGATGWSISFINNASKGLFLQLINK 446
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 36.3 bits (80), Expect = 0.023
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Frame = +3
Query: 285 DIPAVDWIVQYDPPDDPKEYIHRVGRTARG--LGTS 386
DI + +++ +D P+ ++Y+HR+GRTAR GTS
Sbjct: 351 DISDIKFVINFDFPNCTEDYVHRIGRTARSDRTGTS 386
>SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)
Length = 1728
Score = 32.7 bits (71), Expect = 0.29
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +3
Query: 261 TDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTAR 371
T V GLDI VD IV +D P + R+GRT R
Sbjct: 587 TCVGEEGLDIGDVDLIVCFDAHASPIRLVQRMGRTGR 623
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 32.3 bits (70), Expect = 0.38
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +3
Query: 261 TDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLRYL 440
T+ RGLD +D + + P + +EY+H GR R G G A + +G R L
Sbjct: 485 TEETVRGLDFKELDHVYLMEVPKNVEEYLHLCGRVGR-QGRPGTATTVVDMNVVGEERRL 543
Query: 441 K 443
+
Sbjct: 544 R 544
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +3
Query: 330 DPKEYIHRVGRTARGLGTSGHALLFL 407
+ ++YIHRVGRTAR G SG ++ F+
Sbjct: 125 EKEDYIHRVGRTARA-GRSGRSVTFV 149
>SB_52432| Best HMM Match : NDUF_B7 (HMM E-Value=0.47)
Length = 1250
Score = 29.9 bits (64), Expect = 2.0
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Frame = -2
Query: 463 FRVTLDCFKYRKNPSSSGRKN-NKACPLVPRPL---AVLPTRWMYSFGSSG-GSYCTIQS 299
F T CF ++PS +K+ NK P+ R L R+ S G+SG G+ C+
Sbjct: 1143 FLSTKQCFPSTESPSEERKKDANKIKPMPRRASQFDKYLQARFGRSLGTSGSGAVCSDMR 1202
Query: 298 T--AGM-SRPRAATSVQRVYQIQHCK 230
T GM SR +A+ + QI C+
Sbjct: 1203 TDVQGMRSRDKASAVSSVMKQIARCR 1228
>SB_50071| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 29.9 bits (64), Expect = 2.0
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Frame = -2
Query: 463 FRVTLDCFKYRKNPSSSGRKN-NKACPLVPRPL---AVLPTRWMYSFGSSG-GSYCTIQS 299
F T CF ++PS +K+ NK P+ R L R+ S G+SG G+ C+
Sbjct: 3 FLSTKQCFPSTESPSEERKKDANKIKPMPRRASQFDKYLQARFGRSLGTSGSGAVCSDMR 62
Query: 298 T--AGM-SRPRAATSVQRVYQIQHCK 230
T GM SR +A+ + QI C+
Sbjct: 63 TDVQGMRSRDKASAVSSVMKQIARCR 88
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 279 GLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPE 416
GLD V I+ Y+ P + Y+ +GR R G H +FL E
Sbjct: 851 GLDKSDVRAIIHYNMPKSFESYVQEIGRAGRD-GKPSHCHVFLDRE 895
>SB_43464| Best HMM Match : Ribosomal_L17 (HMM E-Value=0.0093)
Length = 152
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 7 VDSLEQGYIVCPSEKRMMVLFTFLKKNRKKKVMVFFSTCMSVKY 138
+D +E G+I+ SE R ++ + R KKV+V S +Y
Sbjct: 95 LDMIEDGFILSESEAREKMITKKIVNRRSKKVVVLPSVLSKEEY 138
>SB_43421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 715
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 421 SSSGRKNNKACPLVPRPLAVLPTRWMY 341
S++ R A P +PR LAVL T W Y
Sbjct: 320 STACRTGEGAPPEIPRDLAVLSTEWEY 346
>SB_41067| Best HMM Match : Ribosomal_L17 (HMM E-Value=1.7e-05)
Length = 236
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 7 VDSLEQGYIVCPSEKRMMVLFTFLKKNRKKKVMVFFSTCMSVKY 138
+D +E G+I+ SE R ++ + R KKV+V S +Y
Sbjct: 95 LDMIEDGFILSESEAREKMITKKIVNRRSKKVVVLPSVLSKEEY 138
>SB_58248| Best HMM Match : Pox_A32 (HMM E-Value=0.97)
Length = 540
Score = 27.9 bits (59), Expect = 8.1
Identities = 21/57 (36%), Positives = 25/57 (43%)
Frame = +3
Query: 276 RGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLRYLKQ 446
R L P W + P D + R T RGL G + FLRP L + R LKQ
Sbjct: 308 RNLVSPGKHWRLCLGPEDGRRR--RRENSTPRGLSPLGQRVDFLRPHFLRYER-LKQ 361
>SB_37811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 738
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 215 QHSSSFAMLNLVYSLY*CRGAWSGHSGR 298
+HS F+ + L+Y Y R AW H G+
Sbjct: 648 EHSIFFSAIQLIYRSYNERCAWDQHKGK 675
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,352,885
Number of Sequences: 59808
Number of extensions: 438831
Number of successful extensions: 1107
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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