Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0801
(686 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 58 1e-10
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.6
L10710-1|AAA27730.1| 382|Apis mellifera hyaluronidase protein. 22 6.3
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 21 8.3
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 57.6 bits (133), Expect = 1e-10
Identities = 30/60 (50%), Positives = 36/60 (60%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
+ T VAARGLDI V ++ YD P EY+HR+GRT R +G G A F PEE LR
Sbjct: 506 VATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGR-VGNRGRATSFFDPEEDAPLR 564
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 140 WYLTDIQVEKNTITF 96
WYL + +KNTIT+
Sbjct: 160 WYLIGMPGKKNTITY 174
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 140 WYLTDIQVEKNTITF 96
WYL + +KNTIT+
Sbjct: 160 WYLIGMPGKKNTITY 174
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 140 WYLTDIQVEKNTITF 96
WYL + +KNTIT+
Sbjct: 160 WYLIGMPGKKNTITY 174
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 140 WYLTDIQVEKNTITF 96
WYL + +KNTIT+
Sbjct: 160 WYLIGMPGKKNTITY 174
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 140 WYLTDIQVEKNTITF 96
WYL + +KNTIT+
Sbjct: 160 WYLIGMPGKKNTITY 174
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 140 WYLTDIQVEKNTITF 96
WYL + +KNTIT+
Sbjct: 160 WYLIGMPGKKNTITY 174
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 3.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 140 WYLTDIQVEKNTITF 96
WYL + +KNTIT+
Sbjct: 228 WYLIGMPGKKNTITY 242
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 3.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 140 WYLTDIQVEKNTITF 96
WYL + +KNTIT+
Sbjct: 228 WYLIGMPGKKNTITY 242
>L10710-1|AAA27730.1| 382|Apis mellifera hyaluronidase protein.
Length = 382
Score = 21.8 bits (44), Expect = 6.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +3
Query: 420 LGFLRYLKQSRVTLNEFEFSWN 485
LGF++ + T+ EF WN
Sbjct: 27 LGFVQSTPDNNKTVREFNVYWN 48
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 21.4 bits (43), Expect = 8.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 155 LKSSWWYLTDIQVEKNTITFFFLFFLR 75
LK LT I VE NT+ L FL+
Sbjct: 322 LKRGGKTLTSISVESNTMFINILKFLK 348
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,449
Number of Sequences: 438
Number of extensions: 4540
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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