Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0801
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 126 1e-29
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 120 7e-28
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 95 5e-20
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 93 2e-19
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 85 5e-17
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 76 2e-14
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 69 4e-12
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 68 5e-12
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 67 1e-11
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 64 6e-11
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 62 3e-10
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 61 8e-10
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 61 8e-10
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 60 1e-09
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 60 1e-09
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 60 2e-09
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 58 4e-09
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 58 7e-09
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 57 1e-08
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 57 1e-08
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 57 1e-08
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 57 1e-08
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 56 2e-08
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 56 2e-08
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 55 4e-08
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 55 5e-08
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 55 5e-08
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 55 5e-08
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 55 5e-08
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 55 5e-08
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 55 5e-08
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 54 9e-08
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 54 9e-08
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 54 1e-07
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 54 1e-07
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 54 1e-07
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 54 1e-07
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 53 2e-07
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 53 2e-07
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 52 3e-07
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 52 3e-07
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 52 3e-07
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 52 4e-07
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 51 8e-07
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 51 8e-07
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 50 1e-06
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 50 1e-06
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 50 2e-06
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 49 3e-06
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 48 6e-06
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 48 6e-06
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 47 1e-05
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 47 1e-05
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 47 1e-05
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 47 1e-05
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 45 4e-05
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 45 5e-05
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 45 5e-05
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 44 1e-04
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 44 1e-04
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 43 2e-04
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 41 9e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 36 0.025
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 35 0.058
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 34 0.10
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 32 0.41
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 32 0.41
At5g48560.1 68418.m06005 basic helix-loop-helix (bHLH) family pr... 31 0.72
At3g23690.1 68416.m02979 basic helix-loop-helix (bHLH) family pr... 29 2.9
At3g07070.1 68416.m00840 protein kinase family protein contains ... 29 2.9
At4g17486.1 68417.m02616 expressed protein 29 3.8
At5g24690.1 68418.m02918 expressed protein 28 6.7
At2g01210.1 68415.m00033 leucine-rich repeat transmembrane prote... 28 6.7
At5g42650.1 68418.m05193 allene oxide synthase (AOS) / hydropero... 27 8.8
At5g14650.1 68418.m01716 polygalacturonase, putative / pectinase... 27 8.8
At3g44920.1 68416.m04839 cation/hydrogen exchanger, putative (CH... 27 8.8
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 126 bits (305), Expect = 1e-29
Identities = 56/83 (67%), Positives = 68/83 (81%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
LCTDVAARGLDIP+VDWI+QYDPPD P EYIHRVGRTARG G G ALL L PEEL F+R
Sbjct: 389 LCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPEELQFIR 448
Query: 435 YLKQSRVTLNEFEFSWNKVADIQ 503
YLK ++V + E EF+ +++++Q
Sbjct: 449 YLKAAKVPVKELEFNEKRLSNVQ 471
Score = 79.8 bits (188), Expect = 2e-15
Identities = 38/84 (45%), Positives = 51/84 (60%)
Frame = +1
Query: 4 TVDSLEQGYIVCPSEKRMMVLFTFLKKNRKKKVMVFFSTCMSVKYHHELFNYIDLPVMSI 183
T + LEQGY V PS++R+++L +FLKKN KK+MVFFSTC SV++H E+ D+ V I
Sbjct: 305 TNEGLEQGYCVVPSKQRLILLISFLKKNLNKKIMVFFSTCKSVQFHTEIMKISDVDVSDI 364
Query: 184 HGXXXXXXXXXXXXXXCNAESGIL 255
HG A+ GIL
Sbjct: 365 HGGMDQNRRTKTFFDFMKAKKGIL 388
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/37 (48%), Positives = 29/37 (78%)
Frame = +2
Query: 503 TTLEKLISRNYFLNQSAKEAFKSYLRAYDSHHLKKRF 613
+ LEK ++++Y LN+ AK+A+++YL AY+SH LK F
Sbjct: 472 SALEKCVAKDYNLNKLAKDAYRAYLSAYNSHSLKDIF 508
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 120 bits (290), Expect = 7e-28
Identities = 54/89 (60%), Positives = 68/89 (76%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
LCT+VAARGLD P VDWIVQYDPPD+P +YIHRVGRTARG G G ALL L P+EL F++
Sbjct: 455 LCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQELKFIQ 514
Query: 435 YLKQSRVTLNEFEFSWNKVADIQLH*KNL 521
YLK +++ + E EF K+ D++ +NL
Sbjct: 515 YLKAAKIPVEEHEFEEKKLLDVKPFVENL 543
Score = 77.0 bits (181), Expect = 1e-14
Identities = 40/85 (47%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 4 TVDSLEQGYIVCPSEKRMMVLFTFLKKNR-KKKVMVFFSTCMSVKYHHELFNYIDLPVMS 180
T + LEQGY V PS R++ L TFLK+ + KKK+MVFFSTC S K+H ELF YI +
Sbjct: 370 TNEGLEQGYCVVPSAMRLLFLLTFLKRFQGKKKIMVFFSTCKSTKFHAELFRYIKFDCLE 429
Query: 181 IHGXXXXXXXXXXXXXXCNAESGIL 255
I G AE+GIL
Sbjct: 430 IRGGIDQNKRTPTFLQFIKAETGIL 454
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/35 (57%), Positives = 26/35 (74%)
Frame = +2
Query: 509 LEKLISRNYFLNQSAKEAFKSYLRAYDSHHLKKRF 613
+E LIS NY L +SAKEA+K+Y+ YDSH +K F
Sbjct: 540 VENLISENYALKESAKEAYKTYISGYDSHSMKDVF 574
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 94.7 bits (225), Expect = 5e-20
Identities = 43/77 (55%), Positives = 57/77 (74%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
LCTDVAARGLDIP +D++VQYDPP DP +IHRVGRTAR + G A++FL P+E ++
Sbjct: 324 LCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTAR-MERQGRAIVFLMPKETDYVE 382
Query: 435 YLKQSRVTLNEFEFSWN 485
+++ RV L E + S N
Sbjct: 383 FMRIRRVPLQERKCSEN 399
Score = 36.3 bits (80), Expect = 0.019
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = +1
Query: 28 YIVCPSEKRMMVLFTFLKKNRKKKVMVFFSTCMSVKYHHELFNYI----DLPVMSIHGXX 195
Y+ C ++++ L L +N+ KK++VFF TC V Y + + I + S HG
Sbjct: 244 YLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKM 303
Query: 196 XXXXXXXXXXXXCNAESGIL 255
A SG+L
Sbjct: 304 DQKGRDTALASFTEASSGVL 323
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 92.7 bits (220), Expect = 2e-19
Identities = 41/71 (57%), Positives = 53/71 (74%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
LCTDVAARGLDIP +D++VQYDPP DP + HR GRTAR LG G A++FL P+E ++
Sbjct: 333 LCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAGRTAR-LGRQGRAIVFLLPKEEAYVE 391
Query: 435 YLKQSRVTLNE 467
+++ RV L E
Sbjct: 392 FMRIRRVPLEE 402
Score = 40.7 bits (91), Expect = 9e-04
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Frame = +1
Query: 4 TVDSLEQGYIVCPSEKRMMVLFTFLKKNRKKKVMVFFSTCMSVKYHHELFNYI----DLP 171
T L Y+ C ++K+ L L KN KK++VFF TC SV Y + + I +
Sbjct: 245 TPSGLHLEYMECEADKKSSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSIS 304
Query: 172 VMSIHGXXXXXXXXXXXXXXCNAESGIL 255
++ IHG A SG L
Sbjct: 305 LIPIHGDMKQNARDKALASFTKASSGAL 332
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 84.6 bits (200), Expect = 5e-17
Identities = 41/72 (56%), Positives = 52/72 (72%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
L TDVAARGLD P V I+QYD P + EY+HRVGRTAR +G G ALLFL+P E+ +L+
Sbjct: 404 LSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVGRTAR-IGEKGEALLFLQPIEIDYLK 462
Query: 435 YLKQSRVTLNEF 470
LK+ +L E+
Sbjct: 463 ELKKHGASLTEY 474
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = +1
Query: 16 LEQGYIVCPSEKRMMVLFTFLK----KNRKKKVMVFFSTCMSVKYHHELFNYIDLP 171
L Q Y+ P R++ L + LK + +KV+VFFST +V +H+ L + P
Sbjct: 302 LVQRYLRVPCGARLVALLSVLKNLFEREASQKVVVFFSTRDAVDFHYSLLSEFQWP 357
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 76.2 bits (179), Expect = 2e-14
Identities = 39/82 (47%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Frame = +3
Query: 258 CTDVAARGLDIP-AVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
CTDV ARGLD AVDW+VQ D P+D YIHRVGRTAR T G +LLFL P E +
Sbjct: 373 CTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTAR-FYTQGKSLLFLTPSEEKMIE 431
Query: 435 YLKQSRVTLNEFEFSWNKVADI 500
L++++V + + + K+ ++
Sbjct: 432 KLQEAKVPIKLIKANNQKLQEV 453
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Frame = +1
Query: 1 ATVDSLEQGYIVCPSEKRMMVLFTFLKKNRKKKVMVFFSTCMSVKYHHELFNYI--DLPV 174
AT SL Q ++ P EK++ +L++F+K + +++VF ST VK+ HE FN + +P+
Sbjct: 286 ATPTSLMQTVMIVPVEKKLDMLWSFIKTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIPL 345
Query: 175 MSIHG 189
S+HG
Sbjct: 346 KSLHG 350
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 68.5 bits (160), Expect = 4e-12
Identities = 32/56 (57%), Positives = 41/56 (73%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEEL 422
+CTDVA+RGLDIP+VD ++ YD P + K+YIHRVGRTAR G SG + + EL
Sbjct: 315 VCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARA-GRSGVGISLVNQYEL 369
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/64 (46%), Positives = 44/64 (68%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
L TDVA+RGLDIP VD ++ YD P DP++Y+HRVGRTAR G G A+ + ++ +
Sbjct: 357 LATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARA-GRGGLAVSIITETDVKLIH 415
Query: 435 YLKQ 446
+++
Sbjct: 416 KIEE 419
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 66.9 bits (156), Expect = 1e-11
Identities = 29/62 (46%), Positives = 41/62 (66%)
Frame = +3
Query: 249 YTLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGF 428
+ +CTD A+RG+D VD +V +D P DP EY+ RVGRTARG G A +F+ +++G
Sbjct: 697 FLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGARGKGKAFIFVVGKQVGL 756
Query: 429 LR 434
R
Sbjct: 757 AR 758
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 64.5 bits (150), Expect = 6e-11
Identities = 27/71 (38%), Positives = 43/71 (60%)
Frame = +3
Query: 246 WYTLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELG 425
W + TDV ARG+D ++ ++ YD PD YIHR+GR+ R G SG A+ F +++
Sbjct: 432 WVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRA-GRSGEAITFYTEQDVP 490
Query: 426 FLRYLKQSRVT 458
FLR + + ++
Sbjct: 491 FLRNIANTMMS 501
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 62.5 bits (145), Expect = 3e-10
Identities = 27/59 (45%), Positives = 42/59 (71%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFL 431
+ TD+AARG+DIP +D ++ +D P PK ++HRVGR AR G +G A F+ PE++ ++
Sbjct: 326 IVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARA-GRTGCAYSFVTPEDMPYM 383
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 60.9 bits (141), Expect = 8e-10
Identities = 32/76 (42%), Positives = 41/76 (53%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
+ TDVAARGLDIP V +V +D P+D +Y+HR+GRT R G SG A F R
Sbjct: 463 VATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA-GKSGIATAFFNENNAQLAR 521
Query: 435 YLKQSRVTLNEFEFSW 482
L + N+ W
Sbjct: 522 SLAELMQEANQEVPEW 537
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 60.9 bits (141), Expect = 8e-10
Identities = 32/76 (42%), Positives = 41/76 (53%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
+ TDVAARGLDIP V +V +D P+D +Y+HR+GRT R G SG A F R
Sbjct: 463 VATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA-GKSGIATAFFNENNAQLAR 521
Query: 435 YLKQSRVTLNEFEFSW 482
L + N+ W
Sbjct: 522 SLAELMQEANQEVPEW 537
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/64 (43%), Positives = 42/64 (65%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
+ TDVA+RGLDIP VD ++ Y+ P+DP+ ++HR GRT R G G A+L + +R
Sbjct: 405 VATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRA-GKEGSAILMHTSSQKRTVR 463
Query: 435 YLKQ 446
L++
Sbjct: 464 SLER 467
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 60.5 bits (140), Expect = 1e-09
Identities = 32/76 (42%), Positives = 41/76 (53%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
+ TDVAARGLDIP V +V +D P+D +Y+HR+GRT R G SG A F R
Sbjct: 473 VATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA-GKSGLATAFFNDGNTSLAR 531
Query: 435 YLKQSRVTLNEFEFSW 482
L + N+ W
Sbjct: 532 PLAELMQEANQEVPEW 547
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/76 (40%), Positives = 41/76 (53%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
+ TDVAARGLDIP V +V +D P+D +Y+HR+GRT R G SG A F +
Sbjct: 460 VATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA-GNSGLATAFFNDNNTTMAK 518
Query: 435 YLKQSRVTLNEFEFSW 482
L + N+ W
Sbjct: 519 PLAELMQEANQEVPDW 534
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 58.4 bits (135), Expect = 4e-09
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Frame = +3
Query: 249 YTLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGF 428
+ + TDVAARGLDI V ++ Y P + Y+HRVGRTAR G G+A+ F+ +
Sbjct: 465 FLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARA-GREGYAVTFVTDSDRSL 523
Query: 429 LRYLK-------QSRVTLNEFEFSWNKVAD 497
L+ + +SRV + W+++ D
Sbjct: 524 LKVIAKKVGSKLKSRVIPEQSIVKWSQIID 553
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 57.6 bits (133), Expect = 7e-09
Identities = 30/66 (45%), Positives = 40/66 (60%)
Frame = +3
Query: 261 TDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLRYL 440
+DV+ARG+D P V +VQ P D ++YIHR+GRT R G G +L L P E FL +
Sbjct: 395 SDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGR-KGKEGEGVLLLAPWEEYFLSSV 453
Query: 441 KQSRVT 458
K +T
Sbjct: 454 KDLPIT 459
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/66 (45%), Positives = 40/66 (60%)
Frame = +3
Query: 261 TDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLRYL 440
+DV+ARG+D P V ++Q P D ++YIHR+GRT R G G +L L P E FL L
Sbjct: 369 SDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGR-KGKEGEGILLLAPWEEYFLSSL 427
Query: 441 KQSRVT 458
K +T
Sbjct: 428 KDLPIT 433
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 57.2 bits (132), Expect = 1e-08
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEE 419
+ TDVAARGLD+P VD I+ Y+ P++ + ++HR GRT R G G A+L ++
Sbjct: 403 VATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRA-GKKGSAILIYSQDQ 456
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 56.8 bits (131), Expect = 1e-08
Identities = 28/60 (46%), Positives = 36/60 (60%)
Frame = +3
Query: 261 TDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLRYL 440
TDVAARGLD+ + +V YD P+ ++YIHR+GRT R G G A F + F R L
Sbjct: 467 TDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRA-GAKGMAFTFFTHDNAKFAREL 525
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/66 (43%), Positives = 40/66 (60%)
Frame = +3
Query: 261 TDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLRYL 440
+DV+ARG+D P V +VQ P D ++YIHR+GRT R G G +L L P E F+ +
Sbjct: 697 SDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGR-KGKEGEGVLLLAPWEEYFMSSV 755
Query: 441 KQSRVT 458
K +T
Sbjct: 756 KDLPIT 761
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/49 (48%), Positives = 35/49 (71%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALL 401
+ TDVAARGLD+P VD ++ Y+ P++ + ++HR GRT R G G A+L
Sbjct: 415 VATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRA-GKKGSAIL 462
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/64 (39%), Positives = 43/64 (67%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
+ TDV ARG+D+ V ++ YD P++ + YIHR+GR+ R G G A+ F++ +++ LR
Sbjct: 329 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGR-FGRKGVAINFVKSDDIKILR 387
Query: 435 YLKQ 446
++Q
Sbjct: 388 DIEQ 391
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 55.2 bits (127), Expect = 4e-08
Identities = 28/61 (45%), Positives = 38/61 (62%)
Frame = +3
Query: 261 TDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLRYL 440
+DV+ARG++ P V ++Q P D ++YIHR+GRT R G G LL + P E FL L
Sbjct: 644 SDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGRE-GKGGEGLLLIAPWERYFLDEL 702
Query: 441 K 443
K
Sbjct: 703 K 703
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/55 (43%), Positives = 36/55 (65%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEE 419
+ TDVAARGLD+ + +V YD P+ ++Y+HR+GRT R G +G A F ++
Sbjct: 457 VATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRA-GATGQAFTFFGDQD 510
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/55 (43%), Positives = 36/55 (65%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEE 419
+ TDVAARGLD+ + +V YD P+ ++Y+HR+GRT R G +G A F ++
Sbjct: 457 VATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRA-GATGQAFTFFGDQD 510
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/55 (43%), Positives = 36/55 (65%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEE 419
+ TDVAARGLD+ + +V YD P+ ++Y+HR+GRT R G +G A F ++
Sbjct: 457 VATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRA-GATGQAFTFFGDQD 510
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 54.8 bits (126), Expect = 5e-08
Identities = 28/61 (45%), Positives = 38/61 (62%)
Frame = +3
Query: 261 TDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLRYL 440
+DV+ARG++ P V ++Q P D ++YIHR+GRT R G G LL + P E FL L
Sbjct: 691 SDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGRE-GKGGKGLLLIAPWERYFLDEL 749
Query: 441 K 443
K
Sbjct: 750 K 750
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 54.8 bits (126), Expect = 5e-08
Identities = 26/60 (43%), Positives = 35/60 (58%)
Frame = +3
Query: 261 TDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLRYL 440
TDVAARGLD+ V +++ YD P ++Y+HR+GRT R G G A F F + L
Sbjct: 401 TDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA-GAKGTAYTFFTVANARFAKEL 459
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 54.8 bits (126), Expect = 5e-08
Identities = 27/57 (47%), Positives = 35/57 (61%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELG 425
+ TDVAARGLDIP V+ ++ Y P ++Y+HR+GRT R G G A F P G
Sbjct: 421 VATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRA-GKKGVAHTFFTPLNKG 476
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 54.0 bits (124), Expect = 9e-08
Identities = 30/70 (42%), Positives = 37/70 (52%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
+ TDV RG+DIP V ++ YD P + Y HR+GRT R G SG A FL +
Sbjct: 631 VATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRA-GKSGVATSFLTLHDTEVFY 689
Query: 435 YLKQSRVTLN 464
LKQ V N
Sbjct: 690 DLKQMLVQSN 699
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 54.0 bits (124), Expect = 9e-08
Identities = 23/64 (35%), Positives = 42/64 (65%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
+ +DV ARG+D+ V ++ YD P++P+ YIHR+GR R G G A+ F++ ++ L+
Sbjct: 316 IASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGR-FGREGVAINFVKSSDMKDLK 374
Query: 435 YLKQ 446
+++
Sbjct: 375 DIER 378
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 53.6 bits (123), Expect = 1e-07
Identities = 22/55 (40%), Positives = 35/55 (63%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEE 419
+ TDVA++GLD P + ++ YD P + + Y+HR+GRT R G +G A F+ +
Sbjct: 403 VATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGR-CGKTGIATTFINKNQ 456
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/55 (41%), Positives = 37/55 (67%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEE 419
+ T VAARGLD+ ++ +V +D P+ ++Y+HRVGRT R G G A+ F+ ++
Sbjct: 669 IATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRA-GRKGCAVTFISEDD 722
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/55 (43%), Positives = 35/55 (63%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEE 419
+ TDVAARGLDI + ++ YD P ++Y+HR+GRT R G +G A F ++
Sbjct: 734 IATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRA-GATGVAFTFFTEQD 787
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/55 (41%), Positives = 37/55 (67%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEE 419
+ T VAARGLD+ ++ +V +D P+ ++Y+HRVGRT R G G A+ F+ ++
Sbjct: 831 IATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRA-GRKGCAVTFISEDD 884
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/55 (40%), Positives = 35/55 (63%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEE 419
+ TDVA++GLD P + ++ YD P + + Y+HR+GRT R G +G A F+ +
Sbjct: 452 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGR-CGKTGIATTFINKNQ 505
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/55 (43%), Positives = 36/55 (65%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEE 419
+ TDVAARGLD+ + +V YD P+ ++Y+HR+GRT R G +G A F ++
Sbjct: 528 VATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRA-GATGLAYTFFGDQD 581
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/51 (45%), Positives = 32/51 (62%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFL 407
+ TD+ RG+DI V+ ++ YD PD Y+HRVGR R GT G A+ F+
Sbjct: 343 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR-FGTKGLAITFV 392
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/51 (45%), Positives = 32/51 (62%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFL 407
+ TD+ RG+DI V+ ++ YD PD Y+HRVGR R GT G A+ F+
Sbjct: 260 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR-FGTKGLAITFV 309
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/51 (45%), Positives = 32/51 (62%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFL 407
+ TD+ RG+DI V+ ++ YD PD Y+HRVGR R GT G A+ F+
Sbjct: 343 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR-FGTKGLAITFV 392
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 52.0 bits (119), Expect = 4e-07
Identities = 21/55 (38%), Positives = 35/55 (63%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEE 419
+ TD+ ARG+D+ V ++ +D P P+ Y+HR+GR+ R G G A+ F+ E+
Sbjct: 335 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGR-FGRKGVAINFMTSED 388
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 50.8 bits (116), Expect = 8e-07
Identities = 24/45 (53%), Positives = 33/45 (73%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSG 389
+CTD+AARGLD+ VD +V +D P + +Y+HR GRTAR +G G
Sbjct: 427 VCTDLAARGLDLD-VDHVVMFDFPKNSIDYLHRTGRTAR-MGAKG 469
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 50.8 bits (116), Expect = 8e-07
Identities = 27/71 (38%), Positives = 36/71 (50%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
+ TDVAARGLDI ++ +V YD D ++HR+GRT R G A + E F
Sbjct: 528 IATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAG 587
Query: 435 YLKQSRVTLNE 467
L S V +
Sbjct: 588 ELVNSLVAAGQ 598
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 50.0 bits (114), Expect = 1e-06
Identities = 27/67 (40%), Positives = 39/67 (58%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 434
+ T+VAARGLDI V I+Q +PP + + YIHR GRT R G +G A+ + R
Sbjct: 401 VATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRA-GNTGVAVTLYDSRKSSVSR 459
Query: 435 YLKQSRV 455
K++ +
Sbjct: 460 IEKEAGI 466
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 50.0 bits (114), Expect = 1e-06
Identities = 20/55 (36%), Positives = 35/55 (63%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEE 419
+ TD+ ARG+D+ V ++ +D P P+ Y+HR+GR+ R G G A+ F+ ++
Sbjct: 333 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGR-FGRKGVAINFVTRDD 386
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 49.6 bits (113), Expect = 2e-06
Identities = 20/51 (39%), Positives = 33/51 (64%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFL 407
+ TD+ ARG+D+ V ++ +D P P+ Y+HR+GR+ R G G A+ F+
Sbjct: 333 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGR-FGRKGVAINFV 382
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTAR 371
+CTD AARG+D+P V ++Q D +++HR+GRTAR
Sbjct: 478 VCTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGRTAR 516
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/55 (40%), Positives = 36/55 (65%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEE 419
+CTD+ RG+DI AV+ ++ +D P + + Y+HRVGR+ R G G A+ + E+
Sbjct: 423 VCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGR-FGHLGLAVNLITYED 476
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/55 (40%), Positives = 36/55 (65%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEE 419
+CTD+ RG+DI AV+ ++ +D P + + Y+HRVGR+ R G G A+ + E+
Sbjct: 423 VCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGR-FGHLGLAVNLITYED 476
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/55 (40%), Positives = 31/55 (56%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEE 419
+ TD+ ARG+DI V I+ Y P + Y+HR GRTAR G ++ + P E
Sbjct: 557 IATDLVARGIDIKNVRTIIHYKLPHSAEVYVHRCGRTARAF-ADGCSIALIEPNE 610
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTAR 371
+CTD+ RG+DI AV+ ++ +D P + Y+HRVGR+ R
Sbjct: 416 VCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGR 454
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTAR 371
+CTD+ RG+DI AV+ ++ +D P + Y+HRVGR+ R
Sbjct: 416 VCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGR 454
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTAR 371
+CTD+ RG+DI AV+ ++ +D P + Y+HRVGR+ R
Sbjct: 446 VCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGR 484
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEEL 422
+ +D RG+D+ V ++ YD P K +IHR GRTAR G +G L E+
Sbjct: 383 VASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARA-GQAGRCFTLLSNHEV 437
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = +3
Query: 261 TDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEE 419
T V RG+D+ V ++ +D P KEYIH +GR +R +G G A++F+ ++
Sbjct: 415 TGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASR-MGEKGTAIVFVNEDD 466
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = +3
Query: 261 TDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEE 419
T V RG+D+ V ++ +D P KEYIH +GR +R +G G A++F+ ++
Sbjct: 278 TGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASR-MGEKGTAIVFVNEDD 329
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +3
Query: 261 TDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTAR 371
TD+AARG+D+P I +D P +Y+HR GR R
Sbjct: 398 TDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGR 434
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +3
Query: 261 TDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTAR 371
TD+AARG+D+P I +D P +Y+HR GR R
Sbjct: 241 TDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGR 277
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +3
Query: 276 RGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEEL-GF 428
RG+D V ++ +D P YIHR+GRT R +SG ++ + P+E+ GF
Sbjct: 398 RGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAY-SSGSSVSLISPDEMEGF 448
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 40.7 bits (91), Expect = 9e-04
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +3
Query: 264 DVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSG 389
+++ARGLD+ D +V + P D Y HR GRT R LG G
Sbjct: 465 ELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGR-LGRKG 505
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 16 LEQGYIVCPSEKRMMVLFTFLKKNRKKKVMVFFSTCMSVKY 138
L Y+ C ++++ L L +N+ KK++VFF TC V Y
Sbjct: 213 LRNPYLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDY 253
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWI 308
LCTDVAARGLDIP + +I
Sbjct: 297 LCTDVAARGLDIPGIVYI 314
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 34.7 bits (76), Expect = 0.058
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Frame = +3
Query: 234 QC*IWYTLCTDVAARGLDIPAVDWIVQYDPP-------DDPKEYIHRVGRTAR 371
+C + TDV ARG D V+ +V Y+ P D + Y+HRVGR R
Sbjct: 388 ECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGR 440
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +1
Query: 7 VDSLEQGYIVCPSEKRMMVLF--TFLKKNRKKKVMVFFSTCMSVKYHHELFNYIDLPVMS 180
+DS++Q +VCP E+ + + ++ + ++F T S + H+ + V S
Sbjct: 310 LDSVKQYKVVCPKEQNKIEVIKDQIMELGDIGQTIIFVKTKASAQKVHKALAEMGYDVTS 369
Query: 181 IHG 189
+HG
Sbjct: 370 VHG 372
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 255 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTAR 371
+ T + GLDI VD ++ +D P I R+GRT R
Sbjct: 532 VATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 570
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 31.9 bits (69), Expect = 0.41
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +3
Query: 225 PVLQC*IWYTLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTAR 371
P C I + L A RGL++ D +V YDP +PK V R R
Sbjct: 1373 PDTDCFI-FLLSIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHR 1420
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 31.9 bits (69), Expect = 0.41
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +3
Query: 225 PVLQC*IWYTLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTAR 371
P C I + L A RGL++ D +V YDP +PK V R R
Sbjct: 1372 PDTDCFI-FLLSIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHR 1419
>At5g48560.1 68418.m06005 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 498
Score = 31.1 bits (67), Expect = 0.72
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 321 PPDDPKEYIHRVGRTARGLGTSGHALL-FLRPEELGFLRYLKQSRV 455
PP+ PK+YIH R RG T H+L +R E++G L Q V
Sbjct: 291 PPEPPKDYIH--VRARRGQATDSHSLAERVRREKIGERMKLLQDLV 334
>At3g23690.1 68416.m02979 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 371
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 321 PPDDPKEYIHRVGRTARGLGTSGHAL 398
PP+ PK+YIH R RG T H+L
Sbjct: 181 PPEAPKDYIH--VRARRGQATDSHSL 204
>At3g07070.1 68416.m00840 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 414
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 505 SCISATLFHENSNSFRVTLDCFKYRKNPSSSGRKNNKACPLVPR 374
+C S FHE R + + YR+N +GR NNK P P+
Sbjct: 2 NCFSCFYFHEKKKVPRDSDN--SYRRNGEVTGRDNNKTHPENPK 43
>At4g17486.1 68417.m02616 expressed protein
Length = 224
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +1
Query: 517 TYLSXLFPESICKRSLQKLPESL*FSSLEKTIFDIVTIALAKGIEIHL 660
++ + L PESI ++ LPE L FS +++ + +++ +G E HL
Sbjct: 153 SFCNCLLPESIQLTAVSALPERLEFSDEDESNSEASSVSDEEGSEQHL 200
>At5g24690.1 68418.m02918 expressed protein
Length = 521
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 397 KACPLVPRPLAVLPTRWMYSF-GSSGGSYCTIQSTAGMSR 281
K C +PRPL LP + F +S S+ S +G+ R
Sbjct: 19 KPCLPIPRPLVTLPCKLRRGFVRASSSSFLVDDSVSGLER 58
>At2g01210.1 68415.m00033 leucine-rich repeat transmembrane protein
kinase, putative
Length = 716
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -2
Query: 508 CSCISATLFHENSNSFRVTLDCFKYRKNPSSSGRKNNKACPLVP 377
C+C F S + +C +RK+ S + +N + C +VP
Sbjct: 347 CACNRENQFGVEKESKKRASECLCFRKDESETPSENVEHCDIVP 390
>At5g42650.1 68418.m05193 allene oxide synthase (AOS) /
hydroperoxide dehydrase / cytochrome P450 74A (CYP74A)
identical to Allene oxide synthase, chloroplast
precursor (Hydroperoxide dehydrase) (Cytochrome P450
74A) (SP:Q96242) {Arabidopsis thaliana}
Length = 518
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 530 NYFLNQSAKEAFKSYLRAYDS 592
+YF +Q A+E FKS +R Y+S
Sbjct: 74 DYFYDQGAEEFFKSRIRKYNS 94
>At5g14650.1 68418.m01716 polygalacturonase, putative / pectinase,
putative similar to polygalacturonase PG1 GP|5669846,
PG2 GI:5669848 from [Glycine max]; contains PF00295:
Glycosyl hydrolases family 28 (polygalacturonases)
Length = 435
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 451 LDCFKYRKNPSSSGRKNNKAC 389
+ C K K+P ++ R NN AC
Sbjct: 415 IQCLKTEKSPEAASRSNNDAC 435
>At3g44920.1 68416.m04839 cation/hydrogen exchanger, putative
(CHX11) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 671
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = +3
Query: 291 PAVDWIVQYDPPDDPKE--YIHRVGRTA 368
P V WI+ P D P E YIH V TA
Sbjct: 146 PMVQWIIDRTPEDKPVEDIYIHAVILTA 173
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,229,534
Number of Sequences: 28952
Number of extensions: 314594
Number of successful extensions: 919
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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