Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0800
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    49   7e-07
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    48   2e-06
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    41   1e-04
SPCC1442.13c |||RNA-binding protein, G-pathc type|Schizosaccharo...    38   0.002
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    37   0.002
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    33   0.030
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    32   0.090
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar...    32   0.090
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces...    27   2.6  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    27   3.4  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   4.5  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   4.5  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    25   7.8  

>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
 Frame = +3

Query: 270 KLKEDNVGF--KMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGA 413
           K+K +  GF  KML+K+G+ +GQGLG    GI EP+    +P + +GLGA
Sbjct: 110 KMKFNTTGFGAKMLEKMGYKQGQGLGANAEGIAEPVQSKLRP-ERVGLGA 158


>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 18/33 (54%), Positives = 24/33 (72%)
 Frame = +3

Query: 276 KEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPIN 374
           K++NV  KMLQ+ GW EGQGLG    GI+ P++
Sbjct: 251 KKENVALKMLQRCGWKEGQGLGQHNQGIINPLH 283


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 20/48 (41%), Positives = 26/48 (54%)
 Frame = +3

Query: 285 NVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTSDV 428
           NV  KML  +GWN+G GLG   +GI E I      +  +GLG   S +
Sbjct: 492 NVSMKMLNSMGWNKGSGLGTNENGIKEAIQPTMY-LPGVGLGNKGSKI 538


>SPCC1442.13c |||RNA-binding protein, G-pathc
           type|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = +3

Query: 291 GFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQ 386
           G ++L+ +GW+ G+GLG E  G+V+P+   K+
Sbjct: 149 GKQLLEMMGWSRGKGLGSENQGMVDPVVAVKE 180


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +3

Query: 282 DNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGA-STSDVVSPDDDEFDA 458
           + +GFK+L   GW  G GLG +  G +  I K       LG+GA +T+D+      EF+A
Sbjct: 26  NRLGFKLLSSYGWVNGNGLGEKQHGRIHNI-KVSLKDDTLGIGAKATNDLEWSGLGEFNA 84

Query: 459 YRKRM 473
              R+
Sbjct: 85  IFGRL 89


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 33.5 bits (73), Expect = 0.030
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +3

Query: 270 KLKEDNVGFKMLQKLGWNEGQGLG-VEGSGIVEPINKAKQPVQNLGLG 410
           ++ ++N G ++L+KLGW  G+GLG  E  G  + + +A   V   GLG
Sbjct: 649 EISKENPGRRLLEKLGWYAGKGLGHPENEGSKDSL-RAIVKVSRSGLG 695


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 31.9 bits (69), Expect = 0.090
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +3

Query: 261 KEFKLKEDNVGFKMLQKLGWN 323
           +EF  ++D++G KML+ LGWN
Sbjct: 131 REFSNRDDSIGEKMLKNLGWN 151


>SPBC1604.16c |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 31.9 bits (69), Expect = 0.090
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +3

Query: 273 LKEDNVGFKMLQKLGWN---EGQGLGVEGSGIVEPINKAKQPVQNLGLG 410
           LK  ++G+++L + GW+   +  GLG+E  G   P+   +     +GLG
Sbjct: 110 LKPKSLGYRVLSQYGWSPQGDTAGLGLENQGRRAPVRAFRVKNDTIGLG 158


>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 417 TSDVVSPDDDEFDAYRKRMMLAYRFRPNPLKIHADHIIKNSLK 545
           T ++V  DDDE  AY K   +  R  P P      H  KN+ K
Sbjct: 132 TVEIVEDDDDEEIAYPKEGFVTPRISPPPDVPLRPHKPKNAAK 174


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 228 EKWQRARPEDYKEFKLKEDNVG 293
           E  Q + P+D +EF ++EDN+G
Sbjct: 107 EAAQASNPDDEEEFVMEEDNLG 128


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 619 FR*YLEIHNGLSMVYGIIYSTNNKYFK 539
           +R YLE HNG+S  Y    +T N YF+
Sbjct: 87  YRKYLESHNGISNAYTASNNT-NYYFE 112


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = +3

Query: 435 PDDDEFDAYRKRMMLAYRFRPNPLKIHADHIIKNSLKYLLFVL*IIP*TIDRPLCISKY 611
           PD D  D+   R+M+      N +++ A+H ++ S+  L+    +I   I+  +CI +Y
Sbjct: 779 PDQDAPDS--GRLMVFEMTSDNNIEMQAEHKVQGSVNTLVLYKHLIVAGINASVCIFEY 835


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = +3

Query: 435 PDD---DEFDAYRKRMMLA-YRFRPNPLKIHADHI 527
           PDD   DE D +  ++ L  Y F+  P+ I ADHI
Sbjct: 120 PDDLVEDEVDRFYNKLGLDDYYFQMEPVSIIADHI 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,536
Number of Sequences: 5004
Number of extensions: 54282
Number of successful extensions: 150
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)