Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0800
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0221 + 5962606-5963197,5963711-5963837,5963994-5964100,596... 94 8e-20
02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,362... 48 7e-06
04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-89... 47 1e-05
08_02_0036 - 11455762-11455802,11455996-11456104,11456207-114568... 45 5e-05
02_05_1041 - 33713561-33714564,33714844-33714904,33715640-337159... 43 2e-04
03_01_0177 + 1424773-1424850,1425307-1425391,1425498-1425577,142... 38 0.010
12_02_1111 - 26157796-26160330 36 0.023
01_01_0489 + 3608720-3608811,3609326-3609431,3609518-3609581,360... 36 0.023
04_04_0422 + 25098612-25099025,25099500-25099633,25099817-251000... 35 0.054
01_05_0166 + 18844468-18845184,18847394-18847690 35 0.054
04_04_0489 + 25600543-25601368,25601441-25602282 35 0.071
07_01_0075 - 558829-560859 33 0.29
06_01_0668 - 4882174-4884204 33 0.29
01_05_0604 - 23583244-23584989 30 2.0
07_03_1647 + 28370226-28370369,28370452-28370611,28370704-283708... 29 3.5
03_02_0392 - 8070342-8071628 29 3.5
01_06_1306 + 36151907-36154369 29 4.7
>09_02_0221 +
5962606-5963197,5963711-5963837,5963994-5964100,
5964185-5964328,5964700-5964822,5964921-5965103,
5965540-5965718,5965797-5965823
Length = 493
Score = 94.3 bits (224), Expect = 8e-20
Identities = 42/90 (46%), Positives = 60/90 (66%)
Frame = +3
Query: 237 QRARPEDYKEFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGAS 416
Q+A E ++ K++ DN+G K+L K+GW EG+GLG E SG +PI +LG+GA
Sbjct: 396 QKATKEAAEKAKIQADNIGHKLLSKMGWREGEGLGSERSGRADPIMAGDVKKDHLGVGAV 455
Query: 417 TSDVVSPDDDEFDAYRKRMMLAYRFRPNPL 506
V+ +DD ++ Y+KRMML YR+RPNPL
Sbjct: 456 QPGEVTSEDDIYEQYKKRMMLGYRYRPNPL 485
Score = 34.3 bits (75), Expect = 0.094
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +1
Query: 163 HHIGDFLPPEELKKFMEK 216
HH+GDF+P EEL+KFM +
Sbjct: 372 HHMGDFIPQEELEKFMAR 389
>02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,
3626311-3626479,3626701-3626871,3626948-3627016,
3627094-3627201,3627844-3627997,3628659-3628738,
3628822-3628914,3628951-3629073,3629165-3629915,
3630123-3630163,3630338-3630385
Length = 1038
Score = 48.0 bits (109), Expect = 7e-06
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = +3
Query: 273 LKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGA 413
+ E NVG ++L+ +GW EG GLG GSGI EP+ +AK GLG+
Sbjct: 959 IDESNVGNRILRNMGWQEGLGLGKTGSGIKEPV-QAKSVDVRAGLGS 1004
>04_01_0082 +
897026-897028,897101-897350,898454-898608,898686-898967,
899078-899160,899335-899485,899896-899952,900279-900479
Length = 393
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/59 (44%), Positives = 34/59 (57%)
Frame = +3
Query: 270 KLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTSDVVSPDDD 446
+L NVGF++LQK+GW +G+GLG GI EPI KA LG+G D +D
Sbjct: 58 QLTSSNVGFRLLQKMGW-KGKGLGKNEQGITEPI-KAGIRDAKLGVGKQEQDDFFTSED 114
>08_02_0036 -
11455762-11455802,11455996-11456104,11456207-11456854,
11457422-11457491,11458563-11458624,11458729-11458803,
11459423-11459514,11460233-11461466
Length = 776
Score = 45.2 bits (102), Expect = 5e-05
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +3
Query: 267 FKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLG 410
F++ G KM+ K+G+ EG GLG +G G+++PI ++P ++LGLG
Sbjct: 606 FEMHTKGFGSKMMAKMGFIEGTGLGKDGQGMMQPIQPIQRP-KSLGLG 652
Score = 36.7 bits (81), Expect = 0.018
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3
Query: 228 EKWQRARPEDYK---EFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPI 371
E W+ R + F+ G KM+ ++G+ EG GLG +G GIV P+
Sbjct: 675 EPWRNLRKVEIGGVGSFERHTKGFGSKMMARMGFVEGSGLGKDGQGIVNPL 725
>02_05_1041 -
33713561-33714564,33714844-33714904,33715640-33715951,
33716780-33716917
Length = 504
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +3
Query: 288 VGFKMLQKLGWNEGQGLGVEGSGIVEPIN-KAKQPVQNLGLGASTSDV 428
V KM+ K+G+ EG GLGV G G+++PI K P Q+L + S+V
Sbjct: 307 VASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDHAVAASEV 354
>03_01_0177 +
1424773-1424850,1425307-1425391,1425498-1425577,
1425771-1425898,1425962-1426049,1426187-1426277,
1426712-1426881,1427151-1427438,1427527-1427643,
1427924-1427976,1428029-1428090,1429042-1429118,
1429269-1429322,1429417-1429476,1429581-1429658,
1429805-1429851,1429933-1430051,1430280-1430364,
1430443-1430557,1430662-1430784,1430869-1430969,
1431346-1431475
Length = 742
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +3
Query: 273 LKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGA-STSDVVSPDDDE 449
+ + F++++++GW EG+GLG + GI + + K LG+G S + D +
Sbjct: 13 IARQSAAFRLMKQMGWEEGEGLGKDKQGIKGHV-RVKNKQDTLGVGVDSPHNKWVYDTTQ 71
Query: 450 FDAYRKRM 473
FD K++
Sbjct: 72 FDNILKKL 79
>12_02_1111 - 26157796-26160330
Length = 844
Score = 36.3 bits (80), Expect = 0.023
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 297 KMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGA 413
KM+ +G+ +G GLG GIV P+ +P +N GLG+
Sbjct: 188 KMMAMMGYKDGMGLGKNEQGIVAPVETTLRP-KNAGLGS 225
>01_01_0489 +
3608720-3608811,3609326-3609431,3609518-3609581,
3609905-3609965,3610017-3610144,3610236-3610385,
3610537-3610791,3611060-3611265,3611469-3611696,
3612161-3612259
Length = 462
Score = 36.3 bits (80), Expect = 0.023
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 285 NVGFKMLQKLGWNEGQGLGVEGSGIVEPI 371
N KM++ +GW EG+ LG G+VEPI
Sbjct: 417 NSAKKMMENMGWKEGEALGKSTKGMVEPI 445
>04_04_0422 +
25098612-25099025,25099500-25099633,25099817-25100067,
25100130-25100494
Length = 387
Score = 35.1 bits (77), Expect = 0.054
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +3
Query: 273 LKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTSDVVSPDD 443
L + + +++ ++ + EG GLG G GI++PIN K+ + G+G S S D
Sbjct: 29 LATNQIVARLMAQMNYEEGTGLGKYGHGIIDPINPTKKYGKG-GVGKFESSYDSDSD 84
>01_05_0166 + 18844468-18845184,18847394-18847690
Length = 337
Score = 35.1 bits (77), Expect = 0.054
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 297 KMLQKLGWNEGQGLGVEGSGIVEPI 371
+M+ ++GW EGQGLG + GI P+
Sbjct: 173 RMMARMGWKEGQGLGKQEQGITAPL 197
>04_04_0489 + 25600543-25601368,25601441-25602282
Length = 555
Score = 34.7 bits (76), Expect = 0.071
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 297 KMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTSDVVSPDD 443
+++ ++ + EG GLG G GI++PIN K+ + G+G S S D
Sbjct: 104 RLMAQMNYEEGTGLGKYGHGIIDPINPTKKYGKG-GVGKFESSYDSDSD 151
>07_01_0075 - 558829-560859
Length = 676
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 34 KHKYEYD-SDEDTTDGTWEHKLRXKEMFATEKWADELTRQAAGKHHIGDFLPPEELKKFM 210
+ K E D +E+ G + L+ + A ++W +++ + H++ DFL P+ L++
Sbjct: 411 ERKLEKDLENENGGAGVYSASLKKHYLLADDEWKEDILPEILDGHNVADFLDPDILQRCE 470
Query: 211 E 213
E
Sbjct: 471 E 471
>06_01_0668 - 4882174-4884204
Length = 676
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 34 KHKYEYD-SDEDTTDGTWEHKLRXKEMFATEKWADELTRQAAGKHHIGDFLPPEELKKFM 210
+ K E D +E+ G + L+ + A ++W +++ + H++ DFL P+ L++
Sbjct: 411 ERKLEKDLENENGGAGVYSASLKKHYLLADDEWKEDILPEILDGHNVADFLDPDILQRCE 470
Query: 211 E 213
E
Sbjct: 471 E 471
>01_05_0604 - 23583244-23584989
Length = 581
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 273 LKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPI 371
L + + +++ ++ + EG GLG G GI++PI
Sbjct: 95 LATNQIVARLMAQMNYEEGAGLGKYGHGIIDPI 127
>07_03_1647 +
28370226-28370369,28370452-28370611,28370704-28370831,
28372512-28372628,28372729-28372782,28372985-28373075,
28373517-28373688,28374452-28374573,28374726-28374817,
28375331-28375373,28375596-28375656,28376367-28376515,
28376659-28376729,28376805-28376975,28377056-28377124,
28377427-28377528,28377629-28377697,28378060-28378138,
28378238-28378337,28378438-28378513,28378715-28378894,
28379430-28379552,28379634-28379717,28380068-28380252,
28380339-28380477,28380585-28380644,28380926-28381030,
28381332-28381445
Length = 1019
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 133 DELTRQAAGKHHIGDFLPPEELKKFMEKYSALKNGKE 243
D T K +GD +PP+E+ E AL+N KE
Sbjct: 691 DVTTENEFEKRLLGDVIPPDEIGVTFEDIGALENVKE 727
>03_02_0392 - 8070342-8071628
Length = 428
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 282 DNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQP-VQNLGLGASTSD 425
+ G +L GW+EG+G+G G + + ++ Q LG S +D
Sbjct: 183 EGFGAALLAGYGWSEGKGIGRNNKGDTKVVEYDRRAGTQGLGYNPSEAD 231
>01_06_1306 + 36151907-36154369
Length = 820
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 216 IFSFEKWQRA-RPEDYKEFKLKEDNVGFKML 305
+ S E +R RPE YK+++++ VGFK L
Sbjct: 737 VISCEGLERMERPETYKQWQVRNQRVGFKQL 767
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,493,696
Number of Sequences: 37544
Number of extensions: 342464
Number of successful extensions: 813
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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