Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0800
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28912| Best HMM Match : No HMM Matches (HMM E-Value=.)              95   4e-20
SB_26512| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_49010| Best HMM Match : G-patch (HMM E-Value=5.5e-19)               45   5e-05
SB_35075| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   7e-05
SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08)                44   9e-05
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)                  41   8e-04
SB_52916| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.024
SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)                      30   2.1  
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_6538| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_2246| Best HMM Match : G-patch (HMM E-Value=5.5e-11)                28   6.3  
SB_1893| Best HMM Match : rve (HMM E-Value=0.0043)                     28   6.3  
SB_50941| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_53706| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30)          28   8.3  

>SB_28912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 95.5 bits (227), Expect = 4e-20
 Identities = 46/79 (58%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
 Frame = +1

Query: 7   EAERLAAAGKHKYEYDSDEDTTD-GTWEHKLRXKEMFATEKWADELTRQAAGKHHIGDFL 183
           +A   A A K KYEYDSDE+  + GTWEHK R  EM+ T + A +LT QA GKHHIGDFL
Sbjct: 245 KAAASAKANKPKYEYDSDEEIDEEGTWEHKRRKMEMWKTAEEAKKLTEQAQGKHHIGDFL 304

Query: 184 PPEELKKFMEKYSALKNGK 240
           PP+ELKKF+ K   +K  K
Sbjct: 305 PPDELKKFIAKVKQVKGEK 323



 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 26/41 (63%), Positives = 33/41 (80%)
 Frame = +3

Query: 255 DYKEFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINK 377
           DY EFKL EDN+G++ML+K GW EG+GLG +G GI  PI+K
Sbjct: 332 DYAEFKLTEDNIGYQMLKKAGWEEGKGLGSKGQGITAPIDK 372


>SB_26512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +3

Query: 237 QRARPEDYKEFKLKEDNVGFKMLQKLGWNE-GQGLGVEGSGIVEPINKAKQPVQNLGLGA 413
           Q   P+D   F + +DN+G+++L+K+GW   G GLG    G+ EPI       + LGLGA
Sbjct: 119 QNTIPQDSIGF-IPQDNLGYRLLKKMGWRGYGTGLGKSSQGLAEPITATGVARRELGLGA 177

Query: 414 S 416
           S
Sbjct: 178 S 178


>SB_49010| Best HMM Match : G-patch (HMM E-Value=5.5e-19)
          Length = 263

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 25/69 (36%), Positives = 39/69 (56%)
 Frame = +3

Query: 213 KIFSFEKWQRARPEDYKEFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPV 392
           KI   ++ ++ + E      +   NVGF +LQK+G+ +G GLG EG+G  +PI  A +  
Sbjct: 51  KIKPIKEREKEQREQGMASAIDNSNVGFALLQKMGYKKGAGLGKEGTGRADPIPIAIKTD 110

Query: 393 QNLGLGAST 419
           +  GLG  T
Sbjct: 111 RG-GLGRET 118


>SB_35075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1184

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 21/48 (43%), Positives = 30/48 (62%)
 Frame = +3

Query: 267 FKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLG 410
           + + EDN G++++ K GW+E +GLG EGSG   P+ K       LGLG
Sbjct: 812 YYISEDNPGYRLMVKSGWDEEKGLGPEGSGRQYPV-KTVLKQDRLGLG 858


>SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08)
          Length = 739

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 19/36 (52%), Positives = 24/36 (66%)
 Frame = +3

Query: 273 LKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKA 380
           +  DN G K+L+K+GW  G+GLG E SG VEP   A
Sbjct: 520 INADNKGRKLLEKMGWKTGEGLGKEKSGRVEPYGHA 555


>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
          Length = 765

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = +3

Query: 288 VGFKMLQKLGWNEGQGLGVEGSGIVEPI 371
           +G K+LQK+GW  GQ +G  G G VEPI
Sbjct: 626 IGMKLLQKMGWQPGQAIGRTGEGNVEPI 653


>SB_52916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 508

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = +3

Query: 228 EKWQRARPEDYKE---FKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPI-NKAKQPVQ 395
           ++W+  +  D  +   F+     +G  ++++ GW++GQ LG    GI EP+    ++P  
Sbjct: 440 KQWRSGKDIDLNQVGDFERFTRGIGGSVMRRQGWSQGQSLGSSQPGITEPVPADGQKPSS 499

Query: 396 NLGLG 410
             GLG
Sbjct: 500 KRGLG 504


>SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)
          Length = 1035

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +3

Query: 285 NVGFKMLQKLGWNEGQGLG 341
           ++G ++L ++GW EGQG+G
Sbjct: 131 SIGNRLLTQMGWREGQGIG 149


>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3297

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 297 KMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGAS 416
           + L+ +G+  G+GLG  G G  E +  +KQ  +  GLG S
Sbjct: 93  RQLESMGYKSGEGLGKYGQGRREILEASKQKGRR-GLGFS 131


>SB_6538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 927

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +1

Query: 73  DGTWEHKLRXKEMFATEKWADELTRQAAGKHHIGDFL--PPEELKKFMEKYSALK 231
           D   E +    E+ A E+WA       +   H GDF+  PP E + +M +   LK
Sbjct: 715 DNDTEEQPLNPELAADEEWAHNFDDYHSKSWHGGDFVPKPPGEAELYMSRQYRLK 769


>SB_2246| Best HMM Match : G-patch (HMM E-Value=5.5e-11)
          Length = 396

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 288 VGFKMLQKLGWNEGQGLGVEGSGI 359
           V   ++ K GW +GQGLG    GI
Sbjct: 234 VASSIMAKYGWKDGQGLGKSEQGI 257


>SB_1893| Best HMM Match : rve (HMM E-Value=0.0043)
          Length = 255

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 601 IHNGLSMVYGIIYSTNNKYFKE 536
           +  G S  YG IY+T + Y+KE
Sbjct: 46  LFKGFSSTYGFIYTTTSPYYKE 67


>SB_50941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
 Frame = +3

Query: 300 MLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTSDVVSPDDDEFDAYRKRMML 479
           M+    W +G   G E +GI+ P NK+  P   +   A+ +D+       +        +
Sbjct: 10  MIVNTAWAKGMTAGAEDTGIIVPSNKS--PGLLVQFAANNNDLYEQTLGGYQRTTHETTV 67

Query: 480 AYRFR-------PNPLKIHADHIIK 533
           A   R       P P K HADH  K
Sbjct: 68  AVYQRQLFGPPPPPPPKGHADHSAK 92


>SB_53706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1172

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -2

Query: 692 PLLNNKSRIIYSLILVSIPFNVTMFSIIFR 603
           PL++ + R+  SLI++S+P  +T   ++ R
Sbjct: 703 PLIDLRGRLTLSLIMLSVPLLITKVKLLIR 732


>SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1189

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
 Frame = +3

Query: 234 WQRARPEDYKEFKLKEDNVGFKMLQKL---GWNEGQGLGVEGSGIVEPINKAKQPVQNLG 404
           ++  RP +     LKE   G + + K+     N   G GVE S  +      ++PV+N+ 
Sbjct: 710 YKEVRPANVTSILLKELEAGKQYIVKVTARNKNHDNGPGVEESIFIPVSGDVEKPVKNVR 769

Query: 405 LGASTSDVVSPDDDEFDAYRKRMMLAYR 488
           +   +S  +     E +  R ++   YR
Sbjct: 770 VTPLSSTALRVTWTEMEDLRVQLYHVYR 797


>SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30)
          Length = 508

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +1

Query: 64  DTTDGTWEHKLRXKEMFATEKWADELTRQAAGKHHIGDFLPPEELKKFMEKYSALKNGK 240
           D   GTW  +        ++KW DE  ++ A     GD L  +E+K F E++  ++  +
Sbjct: 332 DMGGGTWAWEGNMNVW--SDKWTDERLKKTAV---FGDSLNDKEIKYFYERFKKIRQSR 385


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,712,276
Number of Sequences: 59808
Number of extensions: 373040
Number of successful extensions: 1138
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)