Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0800
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   4.8  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   4.8  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          22   4.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.5  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 601 IHNGLSMVYGIIYSTNNK 548
           +HN +  ++ II STN K
Sbjct: 55  VHNHIQNIFKIIKSTNEK 72


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 601 IHNGLSMVYGIIYSTNNK 548
           +HN +  ++ II STN K
Sbjct: 38  VHNHIQNIFKIIKSTNEK 55


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 199 SIPPEAGNLQCDVYQQPAVLIHRPTSP*QTFL 104
           S  PEAGN+ C V  +    +H P +   T++
Sbjct: 39  SYGPEAGNVSCSVSWE----VHDPVTNSDTYI 66


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 429 VSPDDDEFDAYRKRMMLAYRF 491
           VSP   E++ Y  R+   Y+F
Sbjct: 622 VSPVSSEYNQYNSRIWGGYKF 642


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 429 VSPDDDEFDAYRKRMMLAYRF 491
           VSP   E++ Y  R+   Y+F
Sbjct: 622 VSPVSSEYNQYNSRIWGGYKF 642


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -2

Query: 548 VFQRVLNNMVCVDFQWIRSESV 483
           +F    N+M+C++ Q ++ ES+
Sbjct: 286 MFDAQTNSMICLNGQVLKRESI 307


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,561
Number of Sequences: 438
Number of extensions: 3765
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)