Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0800
(696 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g52120.1 68416.m05721 SWAP (Suppressor-of-White-APricot)/surp... 97 7e-21
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 52 4e-07
At5g26610.2 68418.m03181 D111/G-patch domain-containing protein ... 50 1e-06
At5g26610.1 68418.m03180 D111/G-patch domain-containing protein ... 50 1e-06
At3g52350.1 68416.m05754 D111/G-patch domain-containing protein ... 47 1e-05
At3g09850.1 68416.m01175 D111/G-patch domain-containing protein ... 45 4e-05
At5g08535.2 68418.m01015 D111/G-patch domain-containing protein ... 45 6e-05
At5g08535.1 68418.m01014 D111/G-patch domain-containing protein ... 45 6e-05
At3g57910.1 68416.m06455 D111/G-patch domain-containing protein ... 41 7e-04
At1g17070.1 68414.m02077 D111/G-patch domain-containing protein ... 41 0.001
At2g42330.1 68415.m05239 D111/G-patch domain-containing protein ... 40 0.001
At1g63980.1 68414.m07247 D111/G-patch domain-containing protein ... 39 0.003
At1g50920.1 68414.m05725 GTP-binding protein-related similar to ... 37 0.011
At2g24830.1 68415.m02970 zinc finger (CCCH-type) family protein ... 37 0.015
At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein, c... 36 0.026
At1g10300.1 68414.m01160 GTP-binding protein-related contains si... 36 0.034
At4g34140.1 68417.m04845 D111/G-patch domain-containing protein ... 35 0.059
At4g25020.1 68417.m03589 KOW domain-containing protein / D111/G-... 31 0.55
At4g24190.2 68417.m03473 shepherd protein (SHD) / clavata format... 30 1.3
At4g24190.1 68417.m03472 shepherd protein (SHD) / clavata format... 30 1.3
At1g30330.1 68414.m03709 auxin-responsive factor (ARF6) identica... 29 2.9
At2g35800.1 68415.m04396 mitochondrial substrate carrier family ... 28 5.1
At5g06250.1 68418.m00698 DNA-binding protein, putative similar t... 28 6.8
At4g14570.1 68417.m02243 acylaminoacyl-peptidase-related similar... 28 6.8
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl... 28 6.8
At3g05110.1 68416.m00555 hypothetical protein 27 9.0
>At3g52120.1 68416.m05721 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / D111/G-patch
domain-containing protein contains Pfam profiles
PF01585: G-patch domain, PF01805: Surp module
Length = 443
Score = 97.5 bits (232), Expect = 7e-21
Identities = 42/90 (46%), Positives = 59/90 (65%)
Frame = +3
Query: 237 QRARPEDYKEFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGAS 416
Q+A E ++ K++ DNVG K+L K+GW EG+G+G G+ +PI NLG+GAS
Sbjct: 346 QKATKEAAEKAKIQADNVGHKLLSKMGWKEGEGIGSSRKGMADPIMAGDVKTNNLGVGAS 405
Query: 417 TSDVVSPDDDEFDAYRKRMMLAYRFRPNPL 506
V P+DD ++ Y+KRMML Y+ RPNPL
Sbjct: 406 APGEVKPEDDIYEQYKKRMMLGYKHRPNPL 435
Score = 31.9 bits (69), Expect = 0.42
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +1
Query: 163 HHIGDFLPPEELKKFMEK 216
HH+GD++P EEL KF+ K
Sbjct: 322 HHMGDYIPLEELDKFLSK 339
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Frame = +3
Query: 261 KEFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTSDV---- 428
+E + E NVG +ML+ +GW+EG GLG +GSG+ EP+ +A+ + GLG+ V
Sbjct: 1020 EERAIDESNVGNRMLRNMGWHEGSGLGKDGSGMKEPV-QAQGVDRRAGLGSQQKKVDAEF 1078
Query: 429 -VSPDDDEFDAYRKRMMLAYR 488
V P D K+ + +R
Sbjct: 1079 EVQPGDTYRTLLHKKALARFR 1099
>At5g26610.2 68418.m03181 D111/G-patch domain-containing protein
contains Pfam PF01585: G-patch domain
Length = 301
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +3
Query: 264 EFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTSD 425
+ K+ NVGF++LQK+GW +G+GLG + GI EPI + + LGLG D
Sbjct: 61 DVKISSSNVGFRLLQKMGW-KGKGLGKQEQGITEPIKSGIRD-RRLGLGKQEED 112
>At5g26610.1 68418.m03180 D111/G-patch domain-containing protein
contains Pfam PF01585: G-patch domain
Length = 301
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +3
Query: 264 EFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTSD 425
+ K+ NVGF++LQK+GW +G+GLG + GI EPI + + LGLG D
Sbjct: 61 DVKISSSNVGFRLLQKMGW-KGKGLGKQEQGITEPIKSGIRD-RRLGLGKQEED 112
>At3g52350.1 68416.m05754 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 180
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +3
Query: 273 LKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGA---STSDVVSPDD 443
+ N+GF++L+K GW EG GLG+ GI+ P+ +A+ GLGA + P D
Sbjct: 77 ISSSNIGFQLLKKHGWKEGTGLGITEQGILVPL-QAEPKHNKQGLGAEKPAKRKPAQPQD 135
Query: 444 DEFDAYRKR 470
F+ K+
Sbjct: 136 TAFEEVSKK 144
>At3g09850.1 68416.m01175 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 781
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = +3
Query: 255 DYKEFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTS 422
D F++ G KM+ K+G+ +G GLG +G GI +PI ++P ++LGLG S
Sbjct: 627 DIGAFEVHTRGFGSKMMAKMGFIDGGGLGKDGKGIAQPIEAVQRP-KSLGLGLDFS 681
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +3
Query: 240 RARPEDYKEFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGA 413
R R + F+ G +M+ ++G+ EG GLG E GIV P+ ++P + G+GA
Sbjct: 723 RIRDKRLGAFEQHTTGFGSRMMARMGFVEGSGLGRESQGIVNPLVAVRRP-RARGIGA 779
>At5g08535.2 68418.m01015 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain; contains
a 2nt micro-exon, as identified using GeneSeqer.
Length = 116
Score = 44.8 bits (101), Expect = 6e-05
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Frame = +3
Query: 273 LKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGA---STSDVVSPDD 443
+ N+GF++L+K GW EG GLG+ GI+ P+ +A+ G+GA + V P
Sbjct: 14 INSSNIGFQLLKKHGWKEGTGLGIAEQGILVPL-QAEPKHNKRGVGAKQPAKRKVAQPQA 72
Query: 444 DEFDAYRKRMMLAYRFRPNPLKIHADHIIKNSLKYLLF 557
+ + ++ L+ + R + H H+ + + F
Sbjct: 73 KDEEVSKQSKKLSKKMR--KMMEHEKHLQEKEFERAFF 108
>At5g08535.1 68418.m01014 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain; contains
a 2nt micro-exon, as identified using GeneSeqer.
Length = 141
Score = 44.8 bits (101), Expect = 6e-05
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Frame = +3
Query: 273 LKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGA---STSDVVSPDD 443
+ N+GF++L+K GW EG GLG+ GI+ P+ +A+ G+GA + V P
Sbjct: 39 INSSNIGFQLLKKHGWKEGTGLGIAEQGILVPL-QAEPKHNKRGVGAKQPAKRKVAQPQA 97
Query: 444 DEFDAYRKRMMLAYRFRPNPLKIHADHIIKNSLKYLLF 557
+ + ++ L+ + R + H H+ + + F
Sbjct: 98 KDEEVSKQSKKLSKKMR--KMMEHEKHLQEKEFERAFF 133
>At3g57910.1 68416.m06455 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 265
Score = 41.1 bits (92), Expect = 7e-04
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +3
Query: 279 EDNVGFKMLQKLGWNEGQGLGVEGSGIVEPI 371
E N+GFK+L+++G+ G LG +GSG EP+
Sbjct: 93 ESNIGFKLLKQMGYKPGSALGKQGSGRAEPV 123
>At1g17070.1 68414.m02077 D111/G-patch domain-containing protein
Similar to SP|Q9ERA6 Tuftelin-interacting protein 11
{Mus musculus}; contains Pfam profile PF01585: G-patch
domain
Length = 849
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = +3
Query: 255 DYKEFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLG 410
D +F+ +G K+L+K+G+ +G GLG GIV PI +P +N+G+G
Sbjct: 192 DIGQFEKSTKGIGMKLLEKMGY-KGGGLGKNQQGIVAPIEAQLRP-KNMGMG 241
>At2g42330.1 68415.m05239 D111/G-patch domain-containing protein
similar to SP|Q9ERA6 Tuftelin-interacting protein 11
{Mus musculus}; contains Pfam profile PF01585: G-patch
domain
Length = 752
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/67 (32%), Positives = 38/67 (56%)
Frame = +3
Query: 210 GKIFSFEKWQRARPEDYKEFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQP 389
GK + + R + + F+ +G K+L+K+G+ +G+GLG GIV PI +P
Sbjct: 80 GKKIADKAHVREKNNKKENFEKFSGGIGMKLLEKMGY-KGRGLGKNQQGIVAPIEVQLRP 138
Query: 390 VQNLGLG 410
+N+G+G
Sbjct: 139 -KNMGMG 144
>At1g63980.1 68414.m07247 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 391
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +3
Query: 243 ARPE-DYKEFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGAST 419
A PE K + +D+ FK+++ +GW EG+GLG + GI + + G+G
Sbjct: 2 AAPEAPVKYVGICKDSAAFKLMKSMGWEEGEGLGKDKQGIKGYV-RVTNKQDTSGVGLDK 60
Query: 420 SDVVSPDDDEFDAYRKRM 473
+ + D +FD K++
Sbjct: 61 PNPWAFDTTQFDNILKKL 78
>At1g50920.1 68414.m05725 GTP-binding protein-related similar to
GTP-binding protein SP:Q99ME9 from [Mus musculus]
Length = 671
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 7 EAERLAAAGKHKYEYDSDEDTTD-GTWEHKLRXKEMFATEKWADELTRQAAGKHHIGDFL 183
+A+ AA K K E D +E+ G + L+ + ++W +++ + H++ DF+
Sbjct: 395 KAKEAAAMEKRKTEKDLEEENGGAGVYSASLKKNYILQHDEWKEDIMPEILDGHNVADFI 454
Query: 184 PPEELKKFME 213
P+ L++ E
Sbjct: 455 DPDILQRLAE 464
>At2g24830.1 68415.m02970 zinc finger (CCCH-type) family protein /
D111/G-patch domain-containing protein contains Pfam
profiles PF01585: G-patch domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 497
Score = 36.7 bits (81), Expect = 0.015
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 288 VGFKMLQKLGWNEGQGLGVEGSGIVEPI 371
+ KM+ +G+ EG GLGV G GI+ PI
Sbjct: 303 IASKMMASMGYREGMGLGVSGQGILNPI 330
>At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein,
chloroplast (DRT111) nearly identical to SP|P42698
DNA-damage-repair/toleration protein DRT111, chloroplast
precursor {Arabidopsis thaliana}; contains Pfam profiles
PF01585: G-patch domain, PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 387
Score = 35.9 bits (79), Expect = 0.026
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +3
Query: 297 KMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTSD 425
+M+ K+GW +GQGLG GI P+ AK+ + G+ + S+
Sbjct: 220 RMMAKMGWKQGQGLGKSEQGITTPL-MAKKTDRRAGVIVNASE 261
>At1g10300.1 68414.m01160 GTP-binding protein-related contains
similarity to nucleolar GTP-binding protein 1 SP: Q9BZE4
from [Homo sapiens];
Length = 687
Score = 35.5 bits (78), Expect = 0.034
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +1
Query: 34 KHKYEYD-SDEDTTDGTWEHKLRXKEMFATEKWADELTRQAAGKHHIGDFLPPEELKKFM 210
K K E D DE+ G + L+ + A E+W D++ + H++ DF+ + L +
Sbjct: 418 KRKTEKDLEDENGGAGVYSASLKKNYILAKEEWKDDIIPEICDCHNVADFVDSDILNRLE 477
Query: 211 EKYS--ALKNGKEPDL 252
E S +L+ +E ++
Sbjct: 478 ELTSEESLRKAEEEEV 493
>At4g34140.1 68417.m04845 D111/G-patch domain-containing protein
contains Pfam PF01585: G-patch domain
Length = 418
Score = 34.7 bits (76), Expect = 0.059
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +3
Query: 297 KMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLG 410
+++ +GW EG+ LG G+VEPI +A N+GLG
Sbjct: 375 RIMGNMGWKEGETLGKNTKGLVEPI-QAVGNTGNVGLG 411
>At4g25020.1 68417.m03589 KOW domain-containing protein /
D111/G-patch domain-containing protein contains Pfam
profiles PF01585: G-patch domain, PF00467: KOW motif
Length = 375
Score = 31.5 bits (68), Expect = 0.55
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +3
Query: 252 EDYKEFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTSD 425
ED++ F + D G +L GW GQG+G++ V+ + K N G G SD
Sbjct: 132 EDFESFPV--DGFGEALLAGYGWKPGQGIGLKAKEDVKIVEYEKWS-GNEGFGFGKSD 186
>At4g24190.2 68417.m03473 shepherd protein (SHD) / clavata formation
protein, putative nearly identical to SHEPHERD
[Arabidopsis thaliana] GI:19570872; contains Pfam
profiles PF02518: ATPase, histidine kinase-, DNA gyrase
B-, and HSP90-like domain protein, PF00183: Hsp90
protein
Length = 823
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = +1
Query: 64 DTTDGTWEHKLRXKEMFATEKWADELTRQAAGKHHI----GDFLPPEELKKFMEKYSALK 231
D + WE K K + + W + L R + H+ G++L +LK+ +++YS
Sbjct: 217 DDSQYVWESKANGKFAVSEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKRYSEFI 276
Query: 232 N 234
N
Sbjct: 277 N 277
>At4g24190.1 68417.m03472 shepherd protein (SHD) / clavata formation
protein, putative nearly identical to SHEPHERD
[Arabidopsis thaliana] GI:19570872; contains Pfam
profiles PF02518: ATPase, histidine kinase-, DNA gyrase
B-, and HSP90-like domain protein, PF00183: Hsp90
protein
Length = 823
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = +1
Query: 64 DTTDGTWEHKLRXKEMFATEKWADELTRQAAGKHHI----GDFLPPEELKKFMEKYSALK 231
D + WE K K + + W + L R + H+ G++L +LK+ +++YS
Sbjct: 217 DDSQYVWESKANGKFAVSEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKRYSEFI 276
Query: 232 N 234
N
Sbjct: 277 N 277
>At1g30330.1 68414.m03709 auxin-responsive factor (ARF6) identical
to ARF6 [Arabidopsis thaliana] GI:4102600 (Science 276
(5320), 1865-1868 (1997))
Length = 933
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 273 LKEDNVGFKMLQKLGWNEG-QGLGVEGSGI 359
LKED++G M L W+ G Q L +G G+
Sbjct: 387 LKEDDMGMSMSSPLMWDRGLQSLNFQGMGV 416
>At2g35800.1 68415.m04396 mitochondrial substrate carrier family
protein contains INTERPRO:IPR001993 Mitochondrial
substrate carrier family, INTERPRO:IPR002048
calcium-binding EF-hand domain
Length = 823
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 327 GQGLGVEGSGIV-EPINKAKQPVQNLGLGASTSDVVSPDDDEFDAYRKRMMLAYRFRPNP 503
G GL E +V + + + + + + +GA + + + FD + RMM A RP
Sbjct: 700 GMGLYAESKKMVAQALGRELEAWETIAVGAVSGGIAAVVTTPFDVMKTRMMTATPGRPIS 759
Query: 504 LKIHADHIIKN 536
+ + I++N
Sbjct: 760 MSMVVVSILRN 770
>At5g06250.1 68418.m00698 DNA-binding protein, putative similar to
DNA-binding proteins from [Arabidopsis thaliana] RAV1
GI:3868857 and RAV2 GI:3868859, AP2 domain containing
protein RAP2.8 [Arabidopsis thaliana] GI:2281641;
contains Pfam profile PF02362: B3 DNA binding domain
Length = 282
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = +1
Query: 34 KHKYEYDSDEDTTDGTWEHKLRXKEMF---ATEKWADELTRQAAGKHHIGDFLP 186
+H++ D+ E TT TW H + +F T +L R K H + P
Sbjct: 20 QHRHTTDTSETTTTATWLHDDLKESLFEKSLTPSDVGKLNRLVIPKQHAEKYFP 73
>At4g14570.1 68417.m02243 acylaminoacyl-peptidase-related similar to
Acylamino-acid-releasing enzyme (EC 3.4.19.1)
(Acyl-peptide hydrolase) (APH) (Acylaminoacyl-peptidase)
(Swiss-Prot:P13676) [Rattus norvegicus]; annotated with
nonconsensus TT and CT acceptor splice sites.
Length = 764
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -3
Query: 604 EIHNGLSMVYGIIYSTNNKYFKEFLIIWS---AWIFN 503
E+H GL Y+T +K +EF+ I S AWIFN
Sbjct: 11 ELHVGLDPTTEEEYATQSKLLQEFINIPSIDKAWIFN 47
>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
identical to ubiquitin-protein ligase 1 [Arabidopsis
thaliana] GI:7108521; E3, HECT-domain protein family;
similar to GI:7108521, GB:AAF36454 from [Arabidopsis
thaliana]
Length = 3891
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 279 EDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGAS-TSDVVSPDDDEFD 455
+D++G + G +E L +G+G++ + ++ GLG D+V DDD+F
Sbjct: 2343 DDDMGDEGEDDEGDDEDADLVEDGAGVMSLAGTDVEDPEDTGLGDEYNDDMVDEDDDDFH 2402
Query: 456 AYR 464
R
Sbjct: 2403 ENR 2405
>At3g05110.1 68416.m00555 hypothetical protein
Length = 372
Score = 27.5 bits (58), Expect = 9.0
Identities = 8/32 (25%), Positives = 18/32 (56%)
Frame = -2
Query: 518 CVDFQWIRSESVSEHHAFPVRVELVVIGRHHV 423
C F+W ++++ H AF + ++ G+H +
Sbjct: 225 CGRFKWENTDTIQSHLAFSHEIHPIIRGKHFI 256
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,066,820
Number of Sequences: 28952
Number of extensions: 277769
Number of successful extensions: 714
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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