Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0799
         (652 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065842-1|BAC06061.1|  256|Homo sapiens seven transmembrane hel...    31   4.7  
AB065655-1|BAC05881.1|  256|Homo sapiens seven transmembrane hel...    31   4.7  

>AB065842-1|BAC06061.1|  256|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 256

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = -2

Query: 441 LILVDYXISKIMTKFFC*LYICLHLVCSS*VSTDMFLI*LNNLVVNPRFY*ITIIYIFV 265
           L+ + +    +++ FFC L   L L CS     ++ L+  + ++    F  + I YIF+
Sbjct: 190 LVKLSFCGPNVISHFFCDLPPLLKLSCSETSMNELLLLIFSGIIATLTFLTVVISYIFI 248


>AB065655-1|BAC05881.1|  256|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 256

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = -2

Query: 441 LILVDYXISKIMTKFFC*LYICLHLVCSS*VSTDMFLI*LNNLVVNPRFY*ITIIYIFV 265
           L+ + +    +++ FFC L   L L CS     ++ L+  + ++    F  + I YIF+
Sbjct: 190 LVKLSFCGPNVISHFFCDLPPLLKLSCSETSMNELLLLIFSGIIATLTFLTVVISYIFI 248


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,046,593
Number of Sequences: 237096
Number of extensions: 1220981
Number of successful extensions: 1517
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1517
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)