Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0799
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.5  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   7.8  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   7.8  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +1

Query: 553 LILHSFSLKLSSMAQLSVGGIHH*KIFKLITTS 651
           L+ H+F  ++ SM+   +  I H  +  +IT++
Sbjct: 491 LLGHAFHSQVLSMSDYDISNIEHEALLLVITST 523


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 241 HNNKKIQFNKYINDSYSIKSGIDY*II*LNQ 333
           +NN    +N Y N++Y+    + Y II + Q
Sbjct: 331 NNNYNNNYNNYNNNNYNNYKKLYYNIINIEQ 361


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
          releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 56 YLNGSKYCYNNTF 18
          +LNGS YC+   F
Sbjct: 2  FLNGSLYCFARLF 14


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,561
Number of Sequences: 438
Number of extensions: 2616
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)