Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0798
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...    74   4e-12
UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1; ...    47   5e-04

>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 77

 Score = 73.7 bits (173), Expect = 4e-12
 Identities = 36/63 (57%), Positives = 45/63 (71%)
 Frame = -1

Query: 622 EVVFYS*LADPADFVMTQSINKRPKLLYKTNLKQTKRIVRRGTYQRKNKIVCFYITPSIF 443
           +++F   LADPADFV+ QSINKRPK LYK NLKQTK I + G   ++ +   FY+ P IF
Sbjct: 15  QILFMIILADPADFVVPQSINKRPKHLYKINLKQTKGIRQTGDTSKEKQNCYFYLIPRIF 74

Query: 442 IFI 434
           IFI
Sbjct: 75  IFI 77


>UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 47

 Score = 46.8 bits (106), Expect = 5e-04
 Identities = 22/26 (84%), Positives = 22/26 (84%)
 Frame = +3

Query: 351 LKLENGWTDLANFDLELFVEVQRRFK 428
           LKLENGWTDLANF LEL VEVQR  K
Sbjct: 20  LKLENGWTDLANFGLELPVEVQRGLK 45


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 635,040,794
Number of Sequences: 1657284
Number of extensions: 12049221
Number of successful extensions: 21953
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21948
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)