Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0798
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25442| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_24125| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_52750| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_25442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1010

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 28/121 (23%), Positives = 46/121 (38%)
 Frame = -1

Query: 577 MTQSINKRPKLLYKTNLKQTKRIVRRGTYQRKNKIVCFYITPSIFIFIHXXXXXXXXXXX 398
           + QS+   P+LL K   +++ +    GT           I   +F++I            
Sbjct: 626 LNQSVKVGPQLLQKIRAEKSSQWKCSGTSTLMQSHTARSILSILFVWITVSLRFVPESEK 685

Query: 397 SRSKLAKSVQPFSSFSETNEQQFIFI**YIDLSLFEFCTVKSVNK*DYVDVSRNMRSGPL 218
            ++  + +  P  +  +TN Q F     + DL  FE  T  S  K  Y   SR    G L
Sbjct: 686 QKTSASTTPGPNGNQDKTNIQTFSCY--FKDLPAFELRTDTSCEKNPYFTRSRKSDDGCL 743

Query: 217 I 215
           +
Sbjct: 744 V 744


>SB_24125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 562 NKRPKLLYKTNLKQTKRIVRRGTYQRKNKIVC 467
           NKR K+LY T  + T  +       ++ K++C
Sbjct: 269 NKRTKVLYNTQTRHTSGVANMNNGNKRTKVLC 300


>SB_52750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 562 NKRPKLLYKTNLKQTKRIVRRGTYQRKNKIVC 467
           NKR K+LY T  + T  +       ++ K++C
Sbjct: 53  NKRTKVLYNTQTRHTSGVGNMNNGNKRTKVLC 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,196,335
Number of Sequences: 59808
Number of extensions: 354402
Number of successful extensions: 626
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)