Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0798
         (700 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58087-1|AAC50544.1|  752|Homo sapiens Hs-CUL-1 protein.               31   5.2  
BX537409-1|CAD97651.1|  776|Homo sapiens hypothetical protein pr...    31   5.2  
BC125120-1|AAI25121.1|  776|Homo sapiens cullin 1 protein.             31   5.2  
BC125119-1|AAI25120.1|  776|Homo sapiens cullin 1 protein.             31   5.2  
AF062536-1|AAC36681.1|  776|Homo sapiens cullin 1 protein.             31   5.2  
AC006323-3|AAS02034.1|  513|Homo sapiens unknown protein.              31   5.2  

>U58087-1|AAC50544.1|  752|Homo sapiens Hs-CUL-1 protein.
          Length = 752

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 494 ISKEKQNCLFLYNSKHFHIYSPFKPSLDFHE*FKIKISQIGPAVLEF 354
           ISK KQ C F Y SK   ++     S D +E FK  ++   P  L+F
Sbjct: 465 ISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDF 511


>BX537409-1|CAD97651.1|  776|Homo sapiens hypothetical protein
           protein.
          Length = 776

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 494 ISKEKQNCLFLYNSKHFHIYSPFKPSLDFHE*FKIKISQIGPAVLEF 354
           ISK KQ C F Y SK   ++     S D +E FK  ++   P  L+F
Sbjct: 489 ISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDF 535


>BC125120-1|AAI25121.1|  776|Homo sapiens cullin 1 protein.
          Length = 776

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 494 ISKEKQNCLFLYNSKHFHIYSPFKPSLDFHE*FKIKISQIGPAVLEF 354
           ISK KQ C F Y SK   ++     S D +E FK  ++   P  L+F
Sbjct: 489 ISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDF 535


>BC125119-1|AAI25120.1|  776|Homo sapiens cullin 1 protein.
          Length = 776

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 494 ISKEKQNCLFLYNSKHFHIYSPFKPSLDFHE*FKIKISQIGPAVLEF 354
           ISK KQ C F Y SK   ++     S D +E FK  ++   P  L+F
Sbjct: 489 ISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDF 535


>AF062536-1|AAC36681.1|  776|Homo sapiens cullin 1 protein.
          Length = 776

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 494 ISKEKQNCLFLYNSKHFHIYSPFKPSLDFHE*FKIKISQIGPAVLEF 354
           ISK KQ C F Y SK   ++     S D +E FK  ++   P  L+F
Sbjct: 489 ISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDF 535


>AC006323-3|AAS02034.1|  513|Homo sapiens unknown protein.
          Length = 513

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 494 ISKEKQNCLFLYNSKHFHIYSPFKPSLDFHE*FKIKISQIGPAVLEF 354
           ISK KQ C F Y SK   ++     S D +E FK  ++   P  L+F
Sbjct: 226 ISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDF 272


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,348,767
Number of Sequences: 237096
Number of extensions: 1587746
Number of successful extensions: 1974
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1974
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)