Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0798
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15620.1 68416.m01981 6-4 photolyase (UVR3) identical to 6-4 ...    29   2.2  
At5g17290.1 68418.m02025 autophagy protein Apg5 family contains ...    29   3.9  

>At3g15620.1 68416.m01981 6-4 photolyase (UVR3) identical to 6-4
           photolyase (UVR3) GB:AB003687 [Arabidopsis thaliana]
           (Nucleic Acids Res. 26 (2), 638-644 (1998))
          Length = 556

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 418 EGLKGE*I*KCLELYKNKQFCFSFDMSPVGQ 510
           +G  GE + +CL+ +K K+ CF +D  P  Q
Sbjct: 107 KGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQ 137


>At5g17290.1 68418.m02025 autophagy protein Apg5 family contains
           Pfam profile: PF04106 autophagy protein Apg5
          Length = 337

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 294 NRLKSIYYYIKMNCCSLVSLKL---ENGWTDLANFDLELFVEVQRRFK 428
           N LK   Y I  NC +++++     E+ WT + N DL+ +  +  + K
Sbjct: 125 NSLKEAQYIINGNCKNVMNMSQSDQEDLWTSVMNGDLDAYTRLSPKLK 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,684,135
Number of Sequences: 28952
Number of extensions: 262983
Number of successful extensions: 456
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)